6D8A
RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth F] | F_UNCLASSIFIED | e6d8aF2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth F] | F_UNCLASSIFIED | e6d8aF5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth F] | F_UNCLASSIFIED | e6d8aF4 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth F] | F_UNCLASSIFIED | e6d8aF3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6d8aA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6d8aA4 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6d8aA1 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6d8aA3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth F] | PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth F] | Uncharacterized protein |
| - | |
B [auth C], E [auth H] | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | - | - | - |
C [auth G], F [auth J] | DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*TP*GP*CP*AP*GP*AP*AP*TP*AP*AP*C)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth F] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, D [auth F] | IPR003165 | Piwi domain | Domain |
A, D [auth F] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |