6D83 | pdb_00006d83

Structure of the cargo bound AP-1:Arf1:tetherin-Nef (L164A, L165A) dileucine mutant dimer monomeric subunit

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth S]SCOP2B SuperfamilySNARE-like 8082711 3001113 SCOP2B (2022-06-29)
G [auth M]SCOP2B Superfamilymu adaptin domain-like 8083652 3000810 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyARM repeat-like 8078176 3000116 SCOP2B (2022-06-29)
F [auth H]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyRas-like P-loop GTPases 8089848 3002022 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyARM repeat-like 8082787 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth S]Y_phosphatasee6d83S1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
G [auth M]Y_phosphatasee6d83M1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
E [auth G]Y_phosphatasee6d83G1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
F [auth H]Y_phosphatasee6d83H1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
D [auth C]Y_phosphatasee6d83C1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
C [auth B]Y_phosphatasee6d83B1 A: alpha arraysX: fingers domain in bacteriophage RB69-like DNA polymerase IH: fingers domain in bacteriophage RB69-like DNA polymerase IT: fingers domain in bacteriophage RB69-like DNA polymerase IF: Y_phosphataseECOD (v295.2)
B [auth L]AAA_lid_3e6d83L1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
A [auth T]BRF1e6d83T01 A: alpha arraysX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: BRF1ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth S]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
G [auth M]PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chainDomain
G [auth M]PF00928Adaptor complexes medium subunit family (Adap_comp_sub)Adaptor complexes medium subunit family- Family
E [auth G]PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
D [auth C],
F [auth H]		PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families together Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth S]AP-1 complex subunit sigma-3
G [auth M]AP-1 complex subunit mu-1
E [auth G]AP-1 complex subunit gamma-1
D [auth C],
F [auth H]		ADP-ribosylation factor 1
C [auth B]AP-1 complex subunit beta-1
A [auth T],
B [auth L]		Bone marrow stromal antigen 2,Protein Nef

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth S]IPR016635Adaptor protein complex, sigma subunitFamily
H [auth S]IPR011012Longin-like domain superfamilyHomologous Superfamily
H [auth S]IPR044733AP-1 complex subunit sigmaFamily
H [auth S]IPR000804Clathrin adaptor complex, small chainConserved Site
H [auth S]IPR022775AP complex, mu/sigma subunitDomain
G [auth M]IPR050431Adaptor complexes medium subunitFamily
G [auth M]IPR011012Longin-like domain superfamilyHomologous Superfamily
G [auth M]IPR022775AP complex, mu/sigma subunitDomain
G [auth M]IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
G [auth M]IPR028565Mu homology domainDomain
G [auth M]IPR018240Clathrin adaptor, mu subunit, conserved siteConserved Site
G [auth M]IPR001392Clathrin adaptor, mu subunitFamily
E [auth G]IPR016024Armadillo-type foldHomologous Superfamily
E [auth G]IPR017107Adaptor protein complex AP-1, gamma subunitFamily
E [auth G]IPR011989Armadillo-like helicalHomologous Superfamily
E [auth G]IPR008153Gamma-adaptin ear (GAE) domainDomain
E [auth G]IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
E [auth G]IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
E [auth G]IPR050840Adaptor Complexes Large SubunitFamily
E [auth G]IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
D [auth C],
F [auth H]		IPR045872ADP-ribosylation factor 1-5Family
D [auth C],
F [auth H]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth C],
F [auth H]		IPR005225Small GTP-binding domainDomain
D [auth C],
F [auth H]		IPR024156Small GTPase superfamily, ARF typeFamily
D [auth C],
F [auth H]		IPR006689Small GTPase superfamily, ARF/SAR typeFamily
C [auth B]IPR016024Armadillo-type foldHomologous Superfamily
C [auth B]IPR013037Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomainHomologous Superfamily
C [auth B]IPR000225ArmadilloRepeat
C [auth B]IPR026739AP complex subunit betaFamily
C [auth B]IPR011989Armadillo-like helicalHomologous Superfamily
C [auth B]IPR012295TBP domain superfamilyHomologous Superfamily
C [auth B]IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
C [auth B]IPR015151Beta-adaptin appendage, C-terminal subdomainDomain
C [auth B]IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
C [auth B]IPR008152Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainDomain
C [auth B]IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
C [auth B]IPR016342AP-1/2/4 complex subunit betaFamily
A [auth T],
B [auth L]		IPR024886Bone marrow stromal antigen 2Family
A [auth T],
B [auth L]		IPR001558HIV negative factor NefFamily
A [auth T],
B [auth L]		IPR027481HIV-1 Nef protein, core domain superfamilyHomologous Superfamily
A [auth T],
B [auth L]		IPR027480HIV-1 Nef protein, anchor domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
H [auth S]:  Q96PC3
D [auth C],
F [auth H]		:  P84077
C [auth B]:  Q10567
A [auth T],
B [auth L]		:  Q10589