6D6U
Human GABA-A receptor alpha1-beta2-gamma2 subtype in complex with GABA and flumazenil, conformation A
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Neur_chan_LBD | e6d6uA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
A | Neur_chan_memb | e6d6uA2 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
C | Neur_chan_LBD | e6d6uC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
C | Neur_chan_memb | e6d6uC2 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
B | Neur_chan_LBD | e6d6uB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
B | Neur_chan_memb | e6d6uB2 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
D | Neur_chan_LBD | e6d6uD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
D | Neur_chan_memb | e6d6uD1 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
E | Neur_chan_LBD | e6d6uE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
E | Neur_chan_memb | e6d6uE1 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
F [auth I] | V-set | e6d6uI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth L] | V-set | e6d6uL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
G [auth J] | V-set_8 | e6d6uJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
I [auth K] | V-set_8 | e6d6uK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
C | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
B | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
B | 1.20.58.390 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
D | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
E | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
F [auth I], H [auth L] | type A receptor alpha-1 beta-2 gamma-2 subtype [Homo sapiens] + | L-KAPPA | Mus musculus (house mouse) | IGKV6-20*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2B_KAPPA | IMGT (202432-0) |
G [auth J], I [auth K] | type A receptor alpha-1 beta-2 gamma-2 subtype [Homo sapiens] + | H-GAMMA-2B | Mus musculus (house mouse) | IGHV14-3*02, IGHJ4*01, IGHG2B*02 | V-DOMAIN VH, C-DOMAIN CH1, C-DOMAIN CH2, C-DOMAIN CH3 | IG | FAB-GAMMA-2B_KAPPA | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth I], H [auth L] | Light Chain | IGKV6 | Kappa | gamma-aminobutyric acid receptor subunit alpha-1,gamma-aminobutyric acid receptor subunit alpha-1 | SAbDab (2024-08-16) |
G [auth J], I [auth K] | Heavy Chain | IGHV14 | - | gamma-aminobutyric acid receptor subunit alpha-1,gamma-aminobutyric acid receptor subunit alpha-1 | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family | |
PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family | |
PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Pentameric ligand-gated ion channels | Ligand-gated ion channel of neurotransmitter receptors |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Cys-Loop Receptor Family | GABAA receptor (α1β2γ2) in complex with GABA and flumazenil antagonist |