6CYF
PcrV fragment with bound Fab
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LcrV_2nd | e6cyfA1 | A: a+b complex topology | X: a+b domain in virulence-associated V antigen (From Topology) | H: a+b domain in virulence-associated V antigen (From Topology) | T: a+b domain in virulence-associated V antigen | F: LcrV_2nd | ECOD (1.6) |
D [auth B] | LcrV_2nd | e6cyfB1 | A: a+b complex topology | X: a+b domain in virulence-associated V antigen (From Topology) | H: a+b domain in virulence-associated V antigen (From Topology) | T: a+b domain in virulence-associated V antigen | F: LcrV_2nd | ECOD (1.6) |
G [auth I] | LcrV_2nd | e6cyfI1 | A: a+b complex topology | X: a+b domain in virulence-associated V antigen (From Topology) | H: a+b domain in virulence-associated V antigen (From Topology) | T: a+b domain in virulence-associated V antigen | F: LcrV_2nd | ECOD (1.6) |
J [auth Q] | LcrV_2nd | e6cyfQ1 | A: a+b complex topology | X: a+b domain in virulence-associated V antigen (From Topology) | H: a+b domain in virulence-associated V antigen (From Topology) | T: a+b domain in virulence-associated V antigen | F: LcrV_2nd | ECOD (1.6) |
B [auth C] | C1-set_4 | e6cyfC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth C] | V-set | e6cyfC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth L] | C1-set_4 | e6cyfL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E [auth L] | V-set | e6cyfL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
H [auth E] | C1-set_4 | e6cyfE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
H [auth E] | V-set | e6cyfE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
K [auth T] | C1-set_4 | e6cyfT2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
K [auth T] | V-set | e6cyfT1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth D] | C1-set_1 | e6cyfD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth D] | V-set_12 | e6cyfD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
F [auth M] | C1-set_1 | e6cyfM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F [auth M] | V-set_12 | e6cyfM2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
I [auth F] | C1-set_1 | e6cyfF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
I [auth F] | V-set_12 | e6cyfF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
L [auth U] | C1-set_1 | e6cyfU1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
L [auth U] | V-set_12 | e6cyfU2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
H [auth E] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
K [auth T] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
F [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
I [auth F] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
L [auth U] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth C], E [auth L], H [auth E], K [auth T] | Antibody Fab Fragment | L-KAPPA | Homo sapiens (human) | IGKV1-6*01, IGKV1-6*02, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202432-0) |
C [auth D], F [auth M], I [auth F], L [auth U] | Antibody Fab Fragment | VH-CH1 | Homo sapiens (human) | IGHV3-23*04, IGHJ3*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C], E [auth L], H [auth E], K [auth T] | Light Chain | IGKV1 | Kappa | type iii secretion system protein | SAbDab (2024-08-16) |
C [auth D], F [auth M], I [auth F], L [auth U] | Heavy Chain | IGHV3 | - | type iii secretion system protein | SAbDab (2024-08-16) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
B [auth C], E [auth L], H [auth E], K [auth T] | Gremubamab | PcrV type III secretion system, Polysaccharide synthesis locus (Pseudomonas) | Therapeutic SAbDab (2024-08-16) |
C [auth D], F [auth M], I [auth F], L [auth U] | Gremubamab | PcrV type III secretion system, Polysaccharide synthesis locus (Pseudomonas) | Therapeutic SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B], G [auth I], J [auth Q] | PF04792 | V antigen (LcrV) protein (LcrV) | V antigen (LcrV) protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, D [auth B], G [auth I], J [auth Q] | Type III secretion system protein | - | - | |
B [auth C], E [auth L], H [auth E], K [auth T] | IgG1 antibody, kappa light chain | - | - | - |
C [auth D], F [auth M], I [auth F], L [auth U] | IgG1 antibody, heavy chain fragment | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B], G [auth I], J [auth Q] | IPR036139 | Virulence-associated V antigen superfamily | Homologous Superfamily |
A, D [auth B], G [auth I], J [auth Q] | IPR005413 | Low calcium response V antigen | Family |