6CW9
Structure of alpha-GC[8,16P] bound by CD1d and in complex with the Va14Vb8.2 TCR
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054657 | 3000071 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | MHC antigen-recognition domain | 8037146 | 3000521 | SCOP2B (2021-05-27) |
D [auth B] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF07686 | e6cw9C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A [auth C] | PF09291 | e6cw9C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF09291 | ECOD (1.6) |
B [auth D] | PF07654 | e6cw9D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth D] | PF07686 | e6cw9D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth A] | PF07654 | e6cw9A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C [auth A] | PF16497 | e6cw9A2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: PF16497 | ECOD (1.6) |
D [auth B] | PF07654 | e6cw9B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
B [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth A] | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (utative) |
C [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
D [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth C] | TR Va14Vb8.2 | TR-ALPHA | Mus musculus (house mouse) | TRAV11*02, TRAJ18*01, TRAC*02 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-1 | IMGT (202428-0) |
B [auth D] | TR Va14Vb8.2 | TR-BETA-1 | Mus musculus (house mouse) | TRBV13-2*01, TRBJ2-5*01, TRBC1*01, TRBC2*01, TRBC2*03 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-1 | TR | TR-ALPHA_BETA-1 | IMGT (202428-0) |
C [auth A] | CD1d | I-ALPHA-LIKE | Mus musculus (house mouse) | CD1D1*01 | G-LIKE-DOMAIN G-ALPHA1-LIKE, G-LIKE-DOMAIN G-ALPHA2-LIKE, C-LIKE-DOMAIN C-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202428-0) |
D [auth B] | CD1d | B2M | Mus musculus (house mouse) | B2M*01 | C-LIKE-DOMAIN C-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202428-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF16497 | MHC-I family domain (MHC_I_3) | MHC-I family domain | - | Domain |
C [auth A] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
D [auth B] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth A] | IPR003597 | Immunoglobulin C1-set | Domain |
C [auth A] | IPR011161 | MHC class I-like antigen recognition-like | Domain |
C [auth A] | IPR011162 | MHC classes I/II-like antigen recognition protein | Homologous Superfamily |
C [auth A] | IPR037055 | MHC class I-like antigen recognition-like superfamily | Homologous Superfamily |
C [auth A] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
C [auth A] | IPR007110 | Immunoglobulin-like domain | Domain |
D [auth B] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
D [auth B] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
D [auth B] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
D [auth B] | IPR007110 | Immunoglobulin-like domain | Domain |
D [auth B] | IPR003597 | Immunoglobulin C1-set | Domain |
D [auth B] | IPR015707 | Beta-2-Microglobulin | Family |