6CNY | pdb_00006cny

2.3 Angstrom Structure of Phosphodiesterase treated Vivid (complex with FMN)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DV-sete6cnyD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
CV-sete6cnyC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
BV-sete6cnyB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: V-setECOD (v294.1)
ACBAHe6cnyA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: CBAHECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
C3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
B3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)
A3.30.450.20 Alpha Beta 2-Layer Sandwich Beta-Lactamase PAS domainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Vivid PAS protein VVD -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR035965PAS domain superfamilyHomologous Superfamily
A, B, C, D
IPR000014PAS domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, C, D
CSX Parent Component: CYS

:  AA0451

:  2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380