6CJT
Structure of the SthK cyclic nucleotide-gated potassium channel in complex with cGMP
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | cNMP_binding_1 | e6cjtC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
C | Ion_trans_2_1 | e6cjtC2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2_1 | ECOD (1.6) |
D | cNMP_binding_1 | e6cjtD2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
D | Ion_trans_2_1 | e6cjtD1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2_1 | ECOD (1.6) |
A | cNMP_binding_1 | e6cjtA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
A | Ion_trans_2_1 | e6cjtA2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2_1 | ECOD (1.6) |
B | cNMP_binding_1 | e6cjtB2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding_1 | ECOD (1.6) |
B | Ion_trans_2_1 | e6cjtB1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans_2_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07885 | Ion channel (Ion_trans_2) | Ion channel | - | Family | |
PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
SthK cyclic nucleotide-gated potassium channel |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013099 | Potassium channel domain | Domain | |
IPR018488 | Cyclic nucleotide-binding, conserved site | Conserved Site | |
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR050866 | Cyclic nucleotide-gated cation channel | Family | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Cyclic nucleotide-gated ion channel |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Potassium, Sodium, & Proton Ion-Selective | Cyclic nucleotide-gated (CNG) potassium channel SthK |