6CGV
Revised crystal structure of human adenovirus
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038153 | 3001214 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Group II dsDNA viruses VP | 8038150 | 3001214 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | Adeno_hexon | e6cgvE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
E | Adeno_hexon_C | e6cgvE2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
I | Adeno_hexon | e6cgvI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
I | Adeno_hexon_C | e6cgvI2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
L | Adeno_hexon | e6cgvL2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
L | Adeno_hexon_C | e6cgvL1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
A | Adeno_hexon | e6cgvA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
A | Adeno_hexon_C | e6cgvA2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
B | Adeno_hexon | e6cgvB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
B | Adeno_hexon_C | e6cgvB2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
C | Adeno_hexon | e6cgvC2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
C | Adeno_hexon_C | e6cgvC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
D | Adeno_hexon | e6cgvD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
D | Adeno_hexon_C | e6cgvD2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
F | Adeno_hexon | e6cgvF2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
F | Adeno_hexon_C | e6cgvF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
G | Adeno_hexon | e6cgvG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
G | Adeno_hexon_C | e6cgvG2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
H | Adeno_hexon | e6cgvH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
H | Adeno_hexon_C | e6cgvH2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
J | Adeno_hexon | e6cgvJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
J | Adeno_hexon_C | e6cgvJ2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
K | Adeno_hexon | e6cgvK1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon | ECOD (1.6) |
K | Adeno_hexon_C | e6cgvK2 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Adeno_hexon_C | ECOD (1.6) |
M [auth N] | Adeno_Penton_B_2nd | e6cgvN2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in Adenovirus penton base protein (From Topology) | T: Jelly-roll domain in Adenovirus penton base protein | F: Adeno_Penton_B_2nd | ECOD (1.6) |
M [auth N] | Adeno_Penton_B_1st | e6cgvN1 | A: a+b complex topology | X: Insertion domain in Adenovirus penton base protein (From Topology) | H: Insertion domain in Adenovirus penton base protein (From Topology) | T: Insertion domain in Adenovirus penton base protein | F: Adeno_Penton_B_1st | ECOD (1.6) |
N [auth M] | Hex_IIIa | e6cgvM1 | A: alpha arrays | X: N-terminal domain of hexon-associated protein (IIIa) (From Topology) | H: N-terminal domain of hexon-associated protein (IIIa) (From Topology) | T: N-terminal domain of hexon-associated protein (IIIa) | F: Hex_IIIa | ECOD (1.6) |
N [auth M] | Hex_IIIa | e6cgvM2 | A: alpha bundles | X: Middle domain of hexon-associated protein (IIIa) (From Topology) | H: Middle domain of hexon-associated protein (IIIa) (From Topology) | T: Middle domain of hexon-associated protein (IIIa) | F: Hex_IIIa | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
N [auth M] | 1.20.120.1500 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Pre-hexon-linking protein IIIa | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01065 | Hexon, adenovirus major coat protein, N-terminal domain (Adeno_hexon) | Hexon, adenovirus major coat protein, N-terminal domain | Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ... | Domain | |
PF03678 | Hexon, adenovirus major coat protein, C-terminal domain (Adeno_hexon_C) | Hexon, adenovirus major coat protein, C-terminal domain | Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ... | Domain | |
N [auth M] | PF02455 | Hexon-associated protein (IIIa) (Hex_IIIa) | Hexon-associated protein (IIIa) | - | Family |
O [auth P], P [auth Q], Q [auth R], R [auth S] | PF03955 | Adenovirus hexon-associated protein (IX) (Adeno_PIX) | Adenovirus hexon-associated protein (IX) | - | Family |
S [auth U], T [auth V] | PF01310 | Adenovirus hexon associated protein, protein VIII (Adeno_PVIII) | Adenovirus hexon associated protein, protein VIII | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044942 | Adenovirus Pll, hexon, subdomain 2 | Homologous Superfamily | |
IPR016107 | Adenovirus Pll, hexon, N-terminal | Domain | |
IPR016108 | Adenovirus Pll, hexon, C-terminal | Domain | |
IPR016112 | Group II dsDNA virus coat/capsid protein | Homologous Superfamily | |
IPR037542 | Adenovirus hexon protein | Family | |
M [auth N] | IPR002605 | Adenovirus penton base protein | Family |
N [auth M] | IPR003479 | Pre-hexon-linking protein IIIa | Family |
N [auth M] | IPR043053 | Pre-hexon-linking protein IIIa, N-terminal | Homologous Superfamily |
O [auth P], P [auth Q], Q [auth R], R [auth S] | IPR005641 | Hexon-associated protein IX | Family |
S [auth U], T [auth V] | IPR000646 | Pre-hexon-linking protein VIII | Family |
U [auth W] | IPR004243 | Minor capsid protein VI | Family |