6C9I

Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins - Scaffold

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064699	3001354	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Tautomerase/MIF	8084399	3001770	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01923	e6c9iA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
B	PF01923	e6c9iB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
C	PF01923	e6c9iC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
D	PF01923	e6c9iD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
I	PF01923	e6c9iI1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
J	PF01923	e6c9iJ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
K	PF01923	e6c9iK1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
L	PF01923	e6c9iL1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
Q	PF01923	e6c9iQ1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
R	PF01923	e6c9iR1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
S	PF01923	e6c9iS1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
T	PF01923	e6c9iT1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: PF01923	ECOD (1.6)
E	PF02962	e6c9iE1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
F	PF02962	e6c9iF1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
G	PF02962	e6c9iG1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
H	PF02962	e6c9iH1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
M	PF02962	e6c9iM1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
N	PF02962	e6c9iN1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
O	PF02962	e6c9iO1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
P	PF02962	e6c9iP1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
U	PF02962	e6c9iU1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
V	PF02962	e6c9iV1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
W	PF02962	e6c9iW1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)
X	PF02962	e6c9iX1	A: a+b two layers	X: Tautomerase/MIF-like	H: Tautomerase/MIF (From Topology)	T: Tautomerase/MIF	F: PF02962	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
B	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
C	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
D	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
I	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
J	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
K	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
L	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
Q	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
R	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
S	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
T	1.20.1200.10	Mainly Alpha	Up-down Bundle	Hypothetical Protein Ta1238	Chain: A	CATH (4.3.0)
E	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
F	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
G	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
H	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
M	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
N	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
O	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
P	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
U	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
V	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
W	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)
X	3.30.429.10	Alpha Beta	2-Layer Sandwich	Macrophage Migration Inhibitory Factor	Macrophage Migration Inhibitory Factor	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, I A, B, C, D, I, J, K, L, Q, R, S, T	PF01923	Cobalamin adenosyltransferase (Cob_adeno_trans)	Cobalamin adenosyltransferase	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion ...	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation [1].The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12 [2].	Domain
E, F, G, H, M E, F, G, H, M, N, O, P, U, V, W, X	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)	5-carboxymethyl-2-hydroxymuconate isomerase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, I A, B, C, D, I, J, K, L, Q, R, S, T	DARP14 - Subunit A with DARPin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding corrinoid adenosyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding metal ion binding	-	-
E, F, G, H, M E, F, G, H, M, N, O, P, U, V, W, X	DARP14 - Subunit B	isomerase activity intramolecular oxidoreductase activity, transposing C=C bonds intramolecular oxidoreductase activity 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, I A, B, C, D, I, J, K, L, Q, R, S, T	IPR029499	Corrinoid adenosyltransferase, PduO-type	Family
A, B, C, D, I A, B, C, D, I, J, K, L, Q, R, S, T	IPR036451	Cobalamin adenosyltransferase-like superfamily	Homologous Superfamily
A, B, C, D, I A, B, C, D, I, J, K, L, Q, R, S, T	IPR016030	Cobalamin adenosyltransferase-like	Domain
E, F, G, H, M E, F, G, H, M, N, O, P, U, V, W, X	IPR014347	Tautomerase/MIF superfamily	Homologous Superfamily
E, F, G, H, M E, F, G, H, M, N, O, P, U, V, W, X	IPR004220	5-carboxymethyl-2-hydroxymuconate isomerase	Family