Annotations: 6C14

CryoEM structure of mouse PCDH15-1EC-LHFPL5 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Y_phosphatase	e6c14D1	A: alpha arrays	X: Surp module (SWAP domain)	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Y_phosphatase	ECOD (v295)
B	Cel124_C	e6c14B1	A: alpha arrays	X: Major facilitator superfamily (MFS) general substrate transporter	H: Major facilitator superfamily (MFS) general substrate transporter	T: Major facilitator superfamily (MFS) general substrate transporter	F: Cel124_C	ECOD (v295)
C	AAA_lid_3	e6c14C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_3	ECOD (v295)
A	HATPase_c_5	e6c14A01	A: alpha arrays	X: Voltage-gated ion channels	H: Voltage-gated ion channels	T: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	F: HATPase_c_5	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF10242	Lipoma HMGIC fusion partner-like protein (L_HMGIC_fpl)	Lipoma HMGIC fusion partner-like protein	-	Family
A, C	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
A, C	PF23206	PCDH15-like domain (PCDH15_12th)	PCDH15-like domain	This domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C ...	This domain is found in human Protocadherin-15 (PCDH15), a calcium-dependent cell-adhesion protein that is essential for maintenance of normal retinal and cochlear function. This domain is predicted to adopt an alpha-beta configuration. It is found C-terminal to several copies of Pfam:PF00028. This domain folds into an alpha/beta structure with ferredoxin-like topology and is involved in homodimerisation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	LHFPL tetraspan subfamily member 5 protein	-	multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development animal organ morphogenesis system development developmental process embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation ear development embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization animal organ development inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization detection of external stimulus system process nervous system process response to stimulus detection of mechanical stimulus involved in sensory perception of sound response to mechanical stimulus response to external stimulus detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of mechanical stimulus response to abiotic stimulus detection of stimulus involved in sensory perception sensory perception of sound localization transport monoatomic ion transport establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure stereocilium bundle intracellular membraneless organelle neuron projection actin cytoskeleton cluster of actin-based cell projections plasma membrane bounded cell projection intracellular organelle cell projection stereocilium cell periphery cellular anatomical structure plasma membrane membrane intracellular anatomical structure stereocilium bundle intracellular membraneless organelle neuron projection actin cytoskeleton cluster of actin-based cell projections plasma membrane bounded cell projection intracellular organelle cell projection stereocilium actin-based cell projection cytoskeleton organelle stereocilium tip membraneless organelle apical part of cell plasma membrane region apical plasma membrane
A, C	Protocadherin-15	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cell adhesion molecule binding protein binding	multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development animal organ morphogenesis system development developmental process embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation ear development embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization animal organ development inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization behavior locomotory behavior response to stimulus response to metal ion response to chemical response to calcium ion tissue morphogenesis morphogenesis of an epithelium reflex response to external stimulus righting reflex sensory perception of light stimulus system process sensory perception nervous system process organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis organelle organization cellular component assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly startle response neuromuscular process detection of external stimulus detection of mechanical stimulus involved in sensory perception of sound response to mechanical stimulus detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of abiotic stimulus detection of stimulus detection of mechanical stimulus response to abiotic stimulus detection of stimulus involved in sensory perception sensory perception of sound multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance equilibrioception neuromuscular process controlling balance cell adhesion visual perception detection of mechanical stimulus involved in equilibrioception adult walking behavior adult locomotory behavior adult behavior walking behavior cell-cell adhesion homophilic cell-cell adhesion multicellular organism growth developmental growth growth actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization actin filament bundle organization actin filament bundle assembly	cellular anatomical structure membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection cellular anatomical structure membrane cell periphery plasma membrane intracellular anatomical structure cytoplasm membrane-bounded organelle non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection photoreceptor cell cilium organelle synapse cell junction stereocilium bundle intracellular membraneless organelle actin cytoskeleton cluster of actin-based cell projections intracellular organelle stereocilium actin-based cell projection cytoskeleton membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR019372	Lipoma HMGIC fusion partner-like protein	Family
A, C	IPR015919	Cadherin-like superfamily	Homologous Superfamily
A, C	IPR056989	Protocadherin-15 domain	Domain
A, C	IPR020894	Cadherin conserved site	Conserved Site
A, C	IPR030718	Extracellular cadherin domain superfamily	Homologous Superfamily
A, C	IPR050971	Cadherin domain-containing protein	Family
A, C	IPR041149	Extracellular cadherin domain	Domain
A, C	IPR002126	Cadherin-like	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Tetraspan junctional complexes	Lipoma HMGIC fusion partner-like protein

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.