6BZF
Structure of S. cerevisiae Zip2:Spo16 complex, C2 form
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UNK_F_TYPE | e6bzfA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
A | UNK_F_TYPE | e6bzfA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: UNK_F_TYPE | ECOD (1.6) |
E | UNK_F_TYPE | e6bzfE2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
B | UNK_F_TYPE | e6bzfB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
B | UNK_F_TYPE | e6bzfB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: UNK_F_TYPE | ECOD (1.6) |
C | UNK_F_TYPE | e6bzfC2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
G | UNK_F_TYPE | e6bzfG2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
D | UNK_F_TYPE | e6bzfD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
D | UNK_F_TYPE | e6bzfD2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: UNK_F_TYPE | ECOD (1.6) |
F | UNK_F_TYPE | e6bzfF2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
F | UNK_F_TYPE | e6bzfF1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: UNK_F_TYPE | ECOD (1.6) |
H | UNK_F_TYPE | e6bzfH1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
H | UNK_F_TYPE | e6bzfH2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19225 | Spo16 protein, N-terminal (Spo16_N) | Spo16 protein, N-terminal | This entry represents proteins related to yeast Spo16 [1]. Spo16 forms a complex with Zip2 and Zip4. Zip2 and Spo16, form a meiosis-specific XPF-ERCC1-like complex. The recombinant Zip2 XPF domain together with Spo16 preferentially binds branched DNA ... | Domain | |
PF21698 | Spo16 protein, C-terminal (Spo16_C) | Spo16 protein, C-terminal | This entry includes proteins related to yeast Spo16 [1]. Spo16 forms a complex with Zip2 and Zip4. Zip2 and Spo16, form a meiosis-specific XPF-ERCC1-like complex. The recombinant Zip2 XPF domain together with Spo16 preferentially binds branched DNA s ... | Domain | |
PF19225 | Spo16 protein, N-terminal (Spo16_N) | Spo16 protein, N-terminal | This entry represents proteins related to yeast Spo16 [1]. Spo16 forms a complex with Zip2 and Zip4. Zip2 and Spo16, form a meiosis-specific XPF-ERCC1-like complex. The recombinant Zip2 XPF domain together with Spo16 preferentially binds branched DNA ... | Domain | |
PF21698 | Spo16 protein, C-terminal (Spo16_C) | Spo16 protein, C-terminal | This entry includes proteins related to yeast Spo16 [1]. Spo16 forms a complex with Zip2 and Zip4. Zip2 and Spo16, form a meiosis-specific XPF-ERCC1-like complex. The recombinant Zip2 XPF domain together with Spo16 preferentially binds branched DNA s ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043637 | Spo16 protein, N-terminal domain | Domain | |
IPR048323 | Spo16 protein, C-terminal | Domain | |
IPR043637 | Spo16 protein, N-terminal domain | Domain | |
IPR048323 | Spo16 protein, C-terminal | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
MLY | Parent Component: LYS :  AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 | |
M0H | Parent Component: CYS :  AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 | |
M0H | Parent Component: CYS :  AA0075 , AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 | |
M0H | Parent Component: CYS :  AA0075 , AA0075 , AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 |