6BWY
DNA substrate selection by APOBEC3G
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8040116 | 3000135 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8040116 | 3000135 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8040116 | 3000135 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Cytidine deaminase-like | 8105521 | 3001838 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8040116 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | POT1 | e6bwyA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: POT1 | ECOD (1.6) |
E [auth A] | APOBEC_N | e6bwyA1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
F [auth B] | POT1 | e6bwyB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: POT1 | ECOD (1.6) |
F [auth B] | APOBEC_N | e6bwyB2 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
G [auth E] | POT1 | e6bwyE2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: POT1 | ECOD (1.6) |
G [auth E] | APOBEC_N | e6bwyE1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
H [auth G] | POT1 | e6bwyG2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: POT1 | ECOD (1.6) |
H [auth G] | APOBEC_N | e6bwyG1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: APOBEC_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
F [auth B] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
G [auth E] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
H [auth G] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B], G [auth E], H [auth G] | PF05240 | APOBEC-like C-terminal domain (APOBEC_C) | APOBEC-like C-terminal domain | This domain is found at the C-termini of the Apolipoprotein B mRNA editing enzyme. | Domain |
E [auth A], F [auth B], G [auth E], H [auth G] | PF02765 | Telomeric single stranded DNA binding POT1/CDC13 (POT1) | Telomeric single stranded DNA binding POT1/CDC13 | This domain binds single stranded telomeric DNA and adopts an OB fold [1]. It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [2-4]. POT1 is one component of the shelterin complex that ... | Domain |