6BRX
Crystal Structure of Human DNA polymerase kappa in complex with DNA containing the major cisplatin lesion
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8040087 | 3000579 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ta1206-like | 8055761 | 3001431 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040088 | 3001272 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8040088 | 3001272 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Lesion bypass DNA polymerase (Y-family), little finger domain | 8040087 | 3000579 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ta1206-like | 8055761 | 3001431 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF11798 | e6brxA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF11798 | ECOD (1.6) |
A | PF11799 | e6brxA3 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: PF11799 | ECOD (1.6) |
A | PF00817 | e6brxA1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00817 | ECOD (1.6) |
A | PF00817 | e6brxA4 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: PF00817 | ECOD (1.6) |
B | PF11798 | e6brxB3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF11798 | ECOD (1.6) |
B | PF11799 | e6brxB2 | A: a+b two layers | X: Reverse ferredoxin | H: Lesion bypass DNA polymerase (Y-family), little finger domain (From Topology) | T: Lesion bypass DNA polymerase (Y-family), little finger domain | F: PF11799 | ECOD (1.6) |
B | PF00817 | e6brxB4 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00817 | ECOD (1.6) |
B | PF00817 | e6brxB1 | A: a+b three layers | X: Hypothetical protein Ta1206-like (From Topology) | H: Hypothetical protein Ta1206-like (From Topology) | T: Hypothetical protein Ta1206-like | F: PF00817 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.150.810 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 3.40.1170.60 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | CATH (4.3.0) | |
A | 3.30.1490.100 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 1.10.150.810 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
B | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
B | 3.40.1170.60 | Alpha Beta | 3-Layer(aba) Sandwich | MutS, DNA mismatch repair protein, domain I | CATH (4.3.0) | |
B | 3.30.1490.100 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00817 | impB/mucB/samB family (IMS) | impB/mucB/samB family | - | Family | |
PF11799 | impB/mucB/samB family C-terminal domain (IMS_C) | impB/mucB/samB family C-terminal domain | These proteins are involved in UV protection (Swiss). | Domain | |
PF11798 | IMS family HHH motif (IMS_HHH) | IMS family HHH motif | - | Motif | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001126 | UmuC domain | Domain | |
IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily | |
IPR036775 | DNA polymerase, Y-family, little finger domain superfamily | Homologous Superfamily | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR050116 | DNA polymerase type-Y | Family | |
IPR022880 | DNA polymerase IV | Family | |
IPR017961 | DNA polymerase, Y-family, little finger domain | Domain | |
IPR006642 | Rad18, zinc finger UBZ4-type | Domain | |
IPR024728 | DNA polymerase type-Y, HhH motif | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q9UBT6 | :