A Complex between PH Domain of LbcRhoGEF (AKAP-Lbc) and Activated RhoA Bound to a GTP Analog
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth C] | d6bcac_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | RhoA | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
| A [auth F] | d6bcaf_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | RhoA | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
| A [auth F] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth B] | p450 | e6bcaB1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
| B [auth A] | Pkinase, ABC1 | e6bcaA1 | A: alpha arrays | X: Cryptochrome/photolyase FAD-binding domain-related | H: Cryptochrome/photolyase FAD-binding domain-related | T: Undecaprenyl diphosphate synthase | F: Pkinase, ABC1 | ECOD (v295.2) |
| D [auth C] | p450 | e6bcaC1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
| A [auth F] | p450 | e6bcaF1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth B] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
| B [auth A] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
| D [auth C] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
| A [auth F] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth A], C [auth B] | PF00169 | PH domain (PH) | PH domain | PH stands for pleckstrin homology. | Domain |
| A [auth F], D [auth C] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ... | Domain |