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 6B6L | pdb_00006b6l

The crystal structure of glycosyl hydrolase family 2 (GH2) member from Bacteroides cellulosilyticus DSM 14838

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B Superfamily(Trans)glycosidases 8090634 3000313 SCOP2B (2022-06-29)
BSCOP2B Superfamilybeta-Galactosidase/glucuronidase domain-like 8090632 3002047 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyE set domains 8090638 3000070 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyE set domains 8090636 3000070 SCOP2B (2022-06-29)
BSCOP2B Superfamilygalactose-binding domain-like 8090630 3000087 SCOP2B (2022-06-29)
ASCOP2 Familybeta-Galactosidase N-terminal domain-like 8058692 4002476 SCOP2 (2022-06-29)
ASCOP2 Familybeta-Galactosidase/glucuronidase domain 8090631 4007531 SCOP2 (2022-06-29)
ASCOP2 Familybeta-glycanases 8090633 4003164 SCOP2 (2022-06-29)
ASCOP2 FamilyE-set domains of sugar-utilizing enzymes 8090635 4007565 SCOP2 (2022-06-29)
ASCOP2 FamilyE-set domains of sugar-utilizing enzymes 8090637 4007565 SCOP2 (2022-06-29)
ASCOP2 Superfamilygalactose-binding domain-like 8090630 3000087 SCOP2 (2022-06-29)
ASCOP2 Superfamilybeta-Galactosidase/glucuronidase domain-like 8090632 3002047 SCOP2 (2022-06-29)
ASCOP2 Superfamily(Trans)glycosidases 8090634 3000313 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyE set domains 8090636 3000070 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyE set domains 8090638 3000070 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGelsoline6b6lB1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: GelsolinECOD (v295.2)
AGelsoline6b6lA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: GelsolinECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Glycosyl hydrolase family 2, sugar binding domain protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR032311Domain of unknown function DUF4982Domain
A, B
IPR051913Glycosyl Hydrolase 2 Domain-Containing ProteinFamily
A, B
IPR006102Glycoside hydrolase family 2, immunoglobulin-like beta-sandwichDomain
A, B
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B
IPR006101Glycoside hydrolase, family 2Family
A, B
IPR040605Glycoside hydrolase family 2, domain 5Domain
A, B
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
A, B
IPR036156Beta-Galactosidase/glucuronidase domain superfamilyHomologous Superfamily
A, B
IPR006104Glycosyl hydrolases family 2, sugar binding domainDomain
A, B
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B
IPR006103Glycoside hydrolase family 2, catalytic domainDomain
A, B
IPR023232Glycoside hydrolase, family 2, active siteActive Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
CSD Parent Component: CYS

:  AA0262

:  L-cysteine sulfinic acid MOD:00267
A, B
MSE Parent Component: MET

:  AA0262