6B40
BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF12940 | e6b40A2 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
A | PF12940 | e6b40A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
F [auth E] | PF12940 | e6b40E1 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
F [auth E] | PF12940 | e6b40E2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth E] | PF12940 | Recombination-activation protein 1 (RAG1), recombinase (RAG1) | Recombination-activation protein 1 (RAG1), recombinase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, F [auth E] | IPR024627 | V(D)J recombination-activating protein 1 | Family |
A, F [auth E] | IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site |
A, F [auth E] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A, F [auth E] | IPR035714 | RAG1 importin-binding | Domain |
A, F [auth E] | IPR001841 | Zinc finger, RING-type | Domain |
E [auth M], J [auth N] | IPR015915 | Kelch-type beta propeller | Homologous Superfamily |