6B0H
Crystal structure of Pfs25 in complex with the transmission blocking antibody 1262
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I] | EGF_CA | e6b0hI1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_CA | ECOD (1.6) |
A [auth I] | Plasmod_Pvs28 | e6b0hI3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: Plasmod_Pvs28 | ECOD (1.6) |
A [auth I] | UNK_F_TYPE | e6b0hI2 | A: few secondary structure elements | X: EGF-like | H: Fibulin-4 EGF-like 1 domain (From Topology) | T: Fibulin-4 EGF-like 1 domain | F: UNK_F_TYPE | ECOD (1.6) |
B [auth J] | EGF_CA | e6b0hJ2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: EGF_CA | ECOD (1.6) |
B [auth J] | Plasmod_Pvs28 | e6b0hJ1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: Plasmod_Pvs28 | ECOD (1.6) |
B [auth J] | UNK_F_TYPE | e6b0hJ3 | A: few secondary structure elements | X: EGF-like | H: Fibulin-4 EGF-like 1 domain (From Topology) | T: Fibulin-4 EGF-like 1 domain | F: UNK_F_TYPE | ECOD (1.6) |
C [auth B] | V-set_8 | e6b0hB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth B] | C1-set_1 | e6b0hB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
D | V-set_8 | e6b0hD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | C1-set_1 | e6b0hD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth A] | C1-set_4 | e6b0hA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E [auth A] | V-set | e6b0hA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth C] | C1-set_4 | e6b0hC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
F [auth C] | V-set | e6b0hC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth I] | 2.90.20.10 | Mainly Beta | Orthogonal Prism | Plasmodium vivax P25 fold | Plasmodium vivax P25 domain | CATH (4.3.0) |
B [auth J] | 2.90.20.10 | Mainly Beta | Orthogonal Prism | Plasmodium vivax P25 fold | Plasmodium vivax P25 domain | CATH (4.3.0) |
C [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
E [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth B], D | Fab 1262 | VH-CH1 | Homo sapiens (human) | IGHV4-4*02, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202434-0) |
E [auth A], F [auth C] | Fab 1262 | L-KAPPA | Homo sapiens (human) | IGKV1-9*01, IGKJ2*04, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202434-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth B], D | Heavy Chain | IGHV4 | - | pfs25 | SAbDab (2024-08-30) |
E [auth A], F [auth C] | Light Chain | IGKV1 | Kappa | pfs25 | SAbDab (2024-08-30) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth I], B [auth J] | PF06247 | Pvs28 EGF domain (Plasmod_Pvs28) | Pvs28 EGF domain | This family consists of several ookinete surface proteins (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth I], B [auth J] | Pfs25 | - | - | |
C [auth B], D | 1262 antibody, heavy chain | - | - | - |
E [auth A], F [auth C] | 1262 antibody, light chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth I], B [auth J] | IPR010423 | Ookinete surface antigen, EGF domain | Domain |
A [auth I], B [auth J] | IPR000742 | EGF-like domain | Domain |