6AC8
Crystal structure of Mycobacterium smegmatis Mfd at 2.75 A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CarD_CdnL_TRCF | e6ac8A5 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: CarD_CdnL_TRCF | ECOD (1.6) |
A | UB2H_1 | e6ac8A7 | A: beta meanders | X: Colicin E3 ribonuclease domain-like | H: UvrB interaction domain (From Topology) | T: UvrB interaction domain | F: UB2H_1 | ECOD (1.6) |
A | TRCF | e6ac8A3 | A: a+b two layers | X: TRCF domain (From Topology) | H: TRCF domain (From Topology) | T: TRCF domain | F: TRCF | ECOD (1.6) |
A | DEAD | e6ac8A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD | ECOD (1.6) |
A | ResIII | e6ac8A4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ResIII | ECOD (1.6) |
A | Helicase_C_6 | e6ac8A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_6 | ECOD (1.6) |
A | UNK_F_TYPE | e6ac8A6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
B | CarD_CdnL_TRCF | e6ac8B5 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: CarD_CdnL_TRCF | ECOD (1.6) |
B | UB2H_1 | e6ac8B7 | A: beta meanders | X: Colicin E3 ribonuclease domain-like | H: UvrB interaction domain (From Topology) | T: UvrB interaction domain | F: UB2H_1 | ECOD (1.6) |
B | TRCF | e6ac8B3 | A: a+b two layers | X: TRCF domain (From Topology) | H: TRCF domain (From Topology) | T: TRCF domain | F: TRCF | ECOD (1.6) |
B | DEAD | e6ac8B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD | ECOD (1.6) |
B | ResIII | e6ac8B4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ResIII | ECOD (1.6) |
B | Helicase_C_6 | e6ac8B2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_6 | ECOD (1.6) |
B | UNK_F_TYPE | e6ac8B6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02559 | CarD-like/TRCF RID domain (CarD_TRCF_RID) | CarD-like/TRCF RID domain | This is the RNA polymerase interacting domain (RID) of transcription-repair-coupling factor (TRCF), CarD and CarD homologue in Myxococcus xanthus, called CdnL. In Myxococcus xanthus, CdnL is a protein required for the activation of light- and starvat ... | Domain | |
PF03461 | TRCF domain (TRCF) | TRCF domain | - | Domain | |
PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF17757 | UvrB interaction domain (UvrB_inter) | UvrB interaction domain | This domain is found in the UvrB protein where it interacts with the UvrA protein [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004576 | Transcription-repair coupling factor | Family | |
IPR041471 | UvrB, interaction domain | Domain | |
IPR036101 | CarD-like/TRCF, RNAP-interacting domain superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR037235 | TRCF-like, C-terminal D7 domain | Homologous Superfamily | |
IPR047112 | ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor | Family | |
IPR003711 | CarD-like/TRCF, RNAP-interacting domain | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005118 | Transcription-repair-coupling factor, C-terminal domain | Domain |