6ABO
human XRCC4 and IFFO1 complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6aboa1 | All beta proteins | XRCC4, N-terminal domain | XRCC4, N-terminal domain | XRCC4, N-terminal domain | XRCC4, N-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d6aboa2 | Coiled coil proteins | Parallel coiled-coil | XRCC4, C-terminal oligomerization domain | XRCC4, C-terminal oligomerization domain | XRCC4, C-terminal oligomerization domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6abob1 | Coiled coil proteins | Parallel coiled-coil | Intermediate filament protein, coiled coil region | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6abob2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | XRCC4_1st | e6aboA2 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: XRCC4_1st | ECOD (1.6) |
A | XRCC4_2nd | e6aboA1 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: XRCC4_2nd | ECOD (1.6) |
A | XRCC4_3rd | e6aboA3 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: XRCC4_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.170.210.10 | Mainly Beta | Beta Complex | Dna Repair Protein Xrcc4 | Chain: A, domain 1 | CATH (utative) |
A | 1.20.5.370 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06632 | XRCC4 N-terminal domain (XRCC4) | XRCC4 N-terminal domain | This family consists of several eukaryotic DNA double-strand break repair and V(D)J recombination protein XRCC4 sequences. In the non-homologous end joining pathway of DNA double-strand break repair, the ligation step is catalysed by a complex of XRC ... | Domain | |
PF21924 | XRCC4 coiled-coil (XRCC4_CC) | XRCC4 coiled-coil | - | Coiled-coil | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR014751 | DNA repair protein XRCC4-like, C-terminal | Homologous Superfamily | |
IPR010585 | DNA repair protein XRCC4 | Family | |
IPR038051 | XRCC4-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR009089 | XRCC4, N-terminal domain superfamily | Homologous Superfamily | |
IPR039008 | Intermediate filament, rod domain | Domain |