Annotations: 5Z96

Structure of the mouse TRPC4 ion channel

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Levi_coat	e5z96D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
C	Levi_coat	e5z96C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
B	Levi_coat	e5z96B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
A	Levi_coat	e5z96A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
C	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
B	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)
A	1.25.40.20	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Ankyrin repeat-containing domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat
A, B, C, D	PF00023	Ankyrin repeat (Ank)	Ankyrin repeat	-	Repeat
A, B, C, D	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Short transient receptor potential channel 4	calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity store-operated calcium channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity cell adhesion molecule binding cadherin binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity store-operated calcium channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity cell adhesion molecule binding cadherin binding protein binding binding beta-catenin binding ion binding alcohol binding inositol 1,4,5 trisphosphate binding anion binding small molecule binding cation binding metal ion binding	developmental process multicellular organismal process cellular developmental process nervous system development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development cellular process system development developmental process multicellular organismal process cellular developmental process nervous system development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development cellular process system development regulation of calcium ion transport regulation of localization regulation of biological process transport regulation of transport regulation of monoatomic ion transport biological regulation establishment of localization metal ion transport calcium ion transport localization monoatomic ion transport regulation of metal ion transport monoatomic cation transport regulation of action potential action potential regulation of biological quality regulation of action potential firing rate regulation of membrane potential nitrogen compound transport organic anion transport gamma-aminobutyric acid secretion carboxylic acid transport secretion acid secretion organic acid transport amino acid transport gamma-aminobutyric acid transport inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis regulation of cytosolic calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of store-operated calcium entry positive regulation of calcium ion transport positive regulation of biological process positive regulation of store-operated calcium entry positive regulation of transport store-operated calcium entry positive regulation of monoatomic ion transport monoatomic ion transmembrane transport monoatomic cation transmembrane transport transmembrane transport calcium ion transmembrane transport calcium ion import	cell-cell junction cellular anatomical structure anchoring junction cell junction cell surface membrane microdomain cell periphery membrane raft plasma membrane raft membrane plasma membrane plasma membrane region caveola basal part of cell cell-cell junction cellular anatomical structure anchoring junction cell junction cell surface membrane microdomain cell periphery membrane raft plasma membrane raft membrane plasma membrane plasma membrane region caveola basal part of cell basal plasma membrane basolateral plasma membrane protein-containing complex transmembrane transporter complex membrane protein complex cation channel complex transporter complex calcium channel complex monoatomic ion channel complex intracellular anatomical structure cell cortex cortical cytoskeleton intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR002153	Transient receptor potential channel, canonical	Family
A, B, C, D	IPR013555	Transient receptor ion channel domain	Domain
A, B, C, D	IPR002110	Ankyrin repeat	Repeat
A, B, C, D	IPR005821	Ion transport domain	Domain
A, B, C, D	IPR005460	Transient receptor potential channel, canonical 4	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Transient receptor potential channels

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Transient Receptor Potential (TRP)	TRPC4 ion channel, apo state

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5Z96 | pdb_00005z96