Annotations: 5Z5C

Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum: lysine-dimethylated form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5z5cd_	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	(Fusobacterium nucleatum subsp. nucleatum ATCC 25586 ) [TaxId: 190304 ],	SCOPe (2.08)
C	d5z5cc_	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	(Fusobacterium nucleatum subsp. nucleatum ATCC 25586 ) [TaxId: 190304 ],	SCOPe (2.08)
B	d5z5cb1	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	(Fusobacterium nucleatum subsp. nucleatum ATCC 25586 ) [TaxId: 190304 ],	SCOPe (2.08)
B	d5z5cb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Fusobacterium nucleatum subsp. nucleatum ATCC 25586 ) [TaxId: 190304 ],	SCOPe (2.08)
A	d5z5ca_	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	automated matches	automated matches	(Fusobacterium nucleatum subsp. nucleatum ATCC 25586 ) [TaxId: 190304 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8077869	3001427	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8077869	3001427	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8077869	3001427	SCOP2B (2022-06-29)
A	SCOP2 Family	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8077868	4000798	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8077869	3001427	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	WD40	e5z5cD1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)
C	WD40	e5z5cC1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)
B	WD40	e5z5cB1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)
A	WD40	e5z5cA1	A: alpha arrays	X: jelly-roll	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: WD40	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00291	Pyridoxal-phosphate dependent enzyme (PALP)	Pyridoxal-phosphate dependent enzyme	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Cysteine synthase	cysteine synthase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity carbon-sulfur lyase activity L-cysteine desulfhydrase activity lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	Homologous Superfamily
A, B, C, D	IPR001926	Tryptophan synthase beta chain-like, PALP domain	Domain
A, B, C, D	IPR050214	Cysteine synthase/Cystathionine beta-synthase	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	MLY	Parent Component: LYS : AA0075 : N6,N6-dimethyl-L-lysine MOD:00084