5UX0
X-ray crystal structure of Marinitoga piezophila Argonaute in complex with 5' OH guide RNA and target DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RNA-binding domain, RBD | 8053683 | 3000110 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8053686 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PAZ domain | 8053684 | 3001750 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Mid domain of argonaute | 8053685 | 3002210 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PAZ domain | 8053684 | 3001750 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribonuclease H-like | 8053686 | 3000143 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Mid domain of argonaute | 8053685 | 3002210 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RNA-binding domain, RBD | 8053683 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07580 | e5ux0A4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07580 | ECOD (1.6) |
A | EUF08371 | e5ux0A3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08371 | ECOD (1.6) |
A | EUF08372 | e5ux0A5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08372 | ECOD (1.6) |
A | EUF08635 | e5ux0A2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: EUF08635 | ECOD (1.6) |
A | Piwi_C_1 | e5ux0A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C_1 | ECOD (1.6) |
D | EUF07580 | e5ux0D3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07580 | ECOD (1.6) |
D | EUF08371 | e5ux0D4 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08371 | ECOD (1.6) |
D | EUF08372 | e5ux0D5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: EUF08372 | ECOD (1.6) |
D | EUF08635 | e5ux0D1 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: EUF08635 | ECOD (1.6) |
D | Piwi_C_1 | e5ux0D2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22136 | Bacterial argonaute protein N-terminal domain (MpAgo_N-like) | Bacterial argonaute protein N-terminal domain | Argonaute proteins are key effectors of eukaryotic RNA interference and, in prokaryotes, function in host genome defense. This entry represents a domain found at the N-terminus of the Marinitoga piezophila Argonaute (MpAgo) protein that uses 5'-hydr ... | Domain | |
PF22362 | Argonaute, middle domain, bacteria (Ago_MID_bact) | Argonaute, middle domain, bacteria | This entry represents the middle domain of bacterial argonaute (Ago) [1,2]. Ago bind small RNA or DNA guides which provide base-pairing specificity for recognition and cleavage of complementary nucleic acid targets. Bacterial Ago adopt a bilobed stru ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Argonaute protein |
| - | ||
RNA (5'-R(*G*GP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*AP*U)-3') | - | - | - | |
DNA (5'-D(P*AP*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*CP*C)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR003165 | Piwi domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |