5LOE
Structure of full length Cody from Bacillus subtilis in complex with Ile
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003364 | 3000034 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | GAF domain-like | 8003369 | 3000080 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | GAF domain-like | 8003369 | 3000080 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003364 | 3000034 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GAF domain-like | 8003369 | 3000080 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003364 | 3000034 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003364 | 3000034 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | GAF domain-like | 8003369 | 3000080 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HTH_CodY | e5loeA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
A | CodY | e5loeA1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
B | HTH_CodY | e5loeB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
B | CodY | e5loeB2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
C | HTH_CodY | e5loeC1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
C | CodY | e5loeC2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
D | HTH_CodY | e5loeD1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_CodY | ECOD (1.6) |
D | CodY | e5loeD2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: CodY | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08222 | CodY helix-turn-helix domain (HTH_CodY) | CodY helix-turn-helix domain | This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nut ... | Domain | |
PF06018 | CodY GAF-like domain (CodY) | CodY GAF-like domain | This domain is a GAF-like domain found at the N-terminus of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. This domain is involved in GTP binding and also branched chain amino acids (Matilla et. al., FEMS Microbiol ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR010312 | Global transcriptional regulator CodY, N-terminal | Domain | |
IPR029016 | GAF-like domain superfamily | Homologous Superfamily | |
IPR013198 | Global transcriptional regulator CodY, C-terminal | Domain | |
IPR014154 | Global transcriptional regulator CodY | Family | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |