5LM7
Crystal structure of the lambda N-Nus factor complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Rad51 N-terminal domain-like | 8040765 | 3000529 | SCOP2B (2021-05-27) |
F [auth C] | SCOP2B Superfamily | Rad51 N-terminal domain-like | 8040765 | 3000529 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | NusB-like | 8038005 | 3000679 | SCOP2B (2021-05-27) |
G [auth D] | SCOP2B Superfamily | NusB-like | 8038005 | 3000679 | SCOP2B (2021-05-27) |
C [auth J] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2021-05-27) |
H [auth E] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00575 | e5lm7A1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5lm7A4 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5lm7A5 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF13184 | e5lm7A3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF13184 | ECOD (1.6) |
A | PF08529 | e5lm7A2 | A: a+b complex topology | X: Transcription factor NusA, N-terminal domain (From Topology) | H: Transcription factor NusA, N-terminal domain (From Topology) | T: Transcription factor NusA, N-terminal domain | F: PF08529 | ECOD (1.6) |
F [auth C] | PF00575 | e5lm7C3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
F [auth C] | F_UNCLASSIFIED | e5lm7C5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth C] | F_UNCLASSIFIED | e5lm7C4 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth C] | PF13184 | e5lm7C1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF13184 | ECOD (1.6) |
F [auth C] | PF08529 | e5lm7C2 | A: a+b complex topology | X: Transcription factor NusA, N-terminal domain (From Topology) | H: Transcription factor NusA, N-terminal domain (From Topology) | T: Transcription factor NusA, N-terminal domain | F: PF08529 | ECOD (1.6) |
B | PF01029 | e5lm7B1 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: PF01029 | ECOD (1.6) |
G [auth D] | PF01029 | e5lm7D1 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: PF01029 | ECOD (1.6) |
C [auth J] | PF00338 | e5lm7J1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
H [auth E] | PF00338 | e5lm7E1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 1.10.940.10 | Mainly Alpha | Orthogonal Bundle | N-utilizing Substance Protein B Homolog | Chain A | CATH (4.3.0) |
G [auth D] | 1.10.940.10 | Mainly Alpha | Orthogonal Bundle | N-utilizing Substance Protein B Homolog | Chain A | CATH (4.3.0) |
C [auth J] | 3.30.70.600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein S10 | CATH (4.3.0) |
H [auth E] | 3.30.70.600 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein S10 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth C] | PF13184 | NusA-like KH domain (KH_5) | NusA-like KH domain | - | Domain |
A, F [auth C] | PF08529 | NusA N-terminal domain (NusA_N) | NusA N-terminal domain | This domain represents the RNA polymerase binding domain of NusA. | Domain |
A, F [auth C] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
B, G [auth D] | PF01029 | NusB family (NusB) | NusB family | The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. | Domain |
C [auth J], H [auth E] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
D [auth N], I [auth F] | PF11438 | 36-mer N-terminal peptide of the N protein (N36) (N36) | 36-mer N-terminal peptide of the N protein (N36) | - | Family |