5JW7
Crystal structure of SopA-Trim56 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pentapeptide_4 | e5jw7A1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pentapeptide repeats (From Topology) | T: Pentapeptide repeats | F: Pentapeptide_4 | ECOD (1.6) |
A | SopA_C | e5jw7A2 | A: a+b complex topology | X: E3 ubiquitin-protein ligase SopA catalytic domain (From Topology) | H: E3 ubiquitin-protein ligase SopA catalytic domain (From Topology) | T: E3 ubiquitin-protein ligase SopA catalytic domain | F: SopA_C | ECOD (1.6) |
B | zf-C3HC4_4 | e5jw7B1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_4 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13981 | SopA-like central domain (SopA) | SopA-like central domain | This domain is found in the E. coli Type III secretion effector proteins SopA and NleL [1,2]. These proteins have been shown to act as E3 ubiquitin ligase enzymes. | Domain | |
PF13445 | RING-type zinc-finger (zf-RING_UBOX) | RING-type zinc-finger | This zinc-finger is a typical RING-type of plant ubiquitin ligases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025726 | E3 ubiquitin ligase SopA-like central domain | Domain | |
IPR038270 | SopA-like, catalytic domain superfamily | Homologous Superfamily | |
IPR025725 | E3 ubiquitin-protein ligase SopA-like, catalytic domain | Domain | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR011042 | Six-bladed beta-propeller, TolB-like | Homologous Superfamily | |
IPR047153 | TRIM45/56/19-like | Family | |
IPR000315 | B-box-type zinc finger | Domain | |
IPR027370 | Zinc finger, RING-type, eukaryotic | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR001841 | Zinc finger, RING-type | Domain |