5HLT
Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102969 | 3000034 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102968 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102969 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102968 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | BpuJI_N_2nd | e5hltA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BpuJI_N_2nd | ECOD (1.6) |
A | BpuJI_N_1st | e5hltA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BpuJI_N_1st | ECOD (1.6) |
B | BpuJI_N_2nd | e5hltB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BpuJI_N_2nd | ECOD (1.6) |
B | BpuJI_N_1st | e5hltB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: BpuJI_N_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.2080 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
A | 1.10.1740.180 | Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor | Chain: A | CATH (4.3.0) |
A | 1.10.10.2090 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.10.10.2080 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
B | 1.10.1740.180 | Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor | Chain: A | CATH (4.3.0) |
B | 1.10.10.2090 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11564 | Restriction endonuclease BpuJI - N terminal (BpuJI_N) | Restriction endonuclease BpuJI - N terminal | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Restriction endonuclease R.BpuJI | - | - | ||
C [auth L], E [auth C] | DNA (5'-D(*GP*YPY*TP*AP*CP*CP*CP*GP*TP*GP*GP*A)-3') | - | - | - |
D [auth M], F [auth D] | DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP*YPY*C)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024975 | Protein NO VEIN, C-terminal | Domain | |
IPR021108 | Restriction endonuclease, type II, BpuJI, N-terminal | Domain |