Skip to main content

 5HLT | pdb_00005hlt

Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8102969 3000034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyWinged helix DNA-binding domain 8102968 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8102969 3000034 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWinged helix DNA-binding domain 8102968 3000034 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BAMP-binding,ACAS_Ne5hltB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AMP-binding,ACAS_NECOD (v295.2)
AAMP-binding,ACAS_Ne5hltA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AMP-binding,ACAS_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.10.2080 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
B1.10.1740.180 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor Chain: ACATH (4.3.0)
B1.10.10.2090 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
A1.10.10.2080 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)
A1.10.1740.180 Mainly Alpha Orthogonal Bundle Rna Polymerase Sigma Factor Chain: ACATH (4.3.0)
A1.10.10.2090 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR024975Protein NO VEIN, C-terminalDomain
A, B
IPR021108Restriction endonuclease, type II, BpuJI, N-terminalDomain