Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102969 | 3000034 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102968 | 3000034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102969 | 3000034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8102968 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | AMP-binding,ACAS_N | e5hltB1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: AMP-binding,ACAS_N | ECOD (v294.2) |
| A | AMP-binding,ACAS_N | e5hltA1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: AMP-binding,ACAS_N | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 1.10.10.2080 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
| B | 1.10.1740.180 | Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor | Chain: A | CATH (4.3.0) |
| B | 1.10.10.2090 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
| A | 1.10.10.2080 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) | |
| A | 1.10.1740.180 | Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor | Chain: A | CATH (4.3.0) |
| A | 1.10.10.2090 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| D [auth M], F [auth D] | DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP*YPY*C)-3') | - | - | - |
| C [auth L], E [auth C] | DNA (5'-D(*GP*YPY*TP*AP*CP*CP*CP*GP*TP*GP*GP*A)-3') | - | - | - |
| Restriction endonuclease R.BpuJI | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR024975 | Protein NO VEIN, C-terminal | Domain | |
| IPR021108 | Restriction endonuclease, type II, BpuJI, N-terminal | Domain |
