Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5dmha_ Alpha and beta proteins (a/b) YgbK-like YgbK-like automated matches automated matches (Cupriavidus necator H16 ) [TaxId: 381666 ], SCOPe (2.08)
Bd5dmhb_ Alpha and beta proteins (a/b) YgbK-like YgbK-like automated matches automated matches (Cupriavidus necator H16 ) [TaxId: 381666 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYgbK-like 8081193 4003267 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYgbK-like 8081194 3000531 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyYgbK-like 8081194 3000531 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADUF1537e5dmhA2 A: a/b three-layered sandwichesX: YgbK-like (From Topology)H: YgbK-like (From Topology)T: YgbK-likeF: DUF1537ECOD (1.6)
ADUF1357_C_1e5dmhA1 A: a/b three-layered sandwichesX: YgbK-like (From Topology)H: YgbK-like (From Topology)T: YgbK-likeF: DUF1357_C_1ECOD (1.6)
BDUF1537e5dmhB2 A: a/b three-layered sandwichesX: YgbK-like (From Topology)H: YgbK-like (From Topology)T: YgbK-likeF: DUF1537ECOD (1.6)
BDUF1357_C_1e5dmhB1 A: a/b three-layered sandwichesX: YgbK-like (From Topology)H: YgbK-like (From Topology)T: YgbK-likeF: DUF1357_C_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF17042Nucleotide-binding C-terminal domain (NBD_C)Nucleotide-binding C-terminal domainThis is the C-terminal domain found in proteins in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini act together to produce a surface into which a ...This is the C-terminal domain found in proteins in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini act together to produce a surface into which a threonate-ADP complex is bound, demonstrating that a sugar binding site is on the N-terminal domain, and a nucleotide binding site is in the C-terminal domain [1]. There is a critical motif, DDXTG, at approximately residues 22-25. Proteins containing this domain have been predicted as kinases. Some members are associated with PdxA2 by physical clustering and gene fusion with PdxA2. Some members that are fused with PdxA2 have been shown to be involved in L-4-hydroxythreonine (4HT) phosphorylation, part of the alternative pathway to make PLP (pyridoxal 5'-phosphate) out of a toxic metabolite, 4HT. However, 4HT phosphorylation might not be the main function of this group of proteins. Moreover, some members that are not associated with pdxA2, and even one that is associated with pdxA2, have lost 4HT kinase activity [2]. Functional analysis demonstrate that family members include D-Threonate kinases (DtnK), D-Erythronate kinases (DenK) and 3-Oxo-tetronate kinases (OtnK) [1].
Domain
A, B
PF07005Sugar-binding N-terminal domain (SBD_N)Sugar-binding N-terminal domainThis is the N-terminal domain found in proteins in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini act together to produce a surface into which a ...This is the N-terminal domain found in proteins in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini act together to produce a surface into which a threonate-ADP complex is bound, demonstrating that a sugar binding site is on the N-terminal domain, and a nucleotide binding site is in the C-terminal domain [1]. There is a critical motif, DDXTG, at approximately residues 22-25. Proteins containing this domain have been predicted as kinases. Some members are associated with PdxA2 by physical clustering and gene fusion with PdxA2. Some members that are fused with PdxA2 have been shown to be involved in L-4-hydroxythreonine (4HT) phosphorylation, part of the alternative pathway to make PLP (pyridoxal 5'-phosphate) out of a toxic metabolite, 4HT. However, 4HT phosphorylation might not be the main function of this group of proteins. Moreover, some members that are not associated with pdxA2, and even one that is associated with pdxA2, have lost 4HT kinase activity [2]. Functional analysis demonstrate that family members include D-Threonate kinases (DtnK), D-Erythronate kinases (DenK) and 3-Oxo-tetronate kinases (OtnK) [1].
Domain