5AMQ
Structure of the La Crosse Bunyavirus polymerase in complex with the 3' and 5' viral RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bunya_RdRp_2nd | e5amqA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: Bunya_RdRp_2nd | ECOD (1.6) |
A | Bunya_RdRp_1st | e5amqA5 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: Bunya_RdRp_1st | ECOD (1.6) |
A | EUF08583 | e5amqA3 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: EUF08583 | ECOD (1.6) |
A | L_protein_N | e5amqA4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: L_protein_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15518 | L protein N-terminus (L_protein_N) | L protein N-terminus | This endonuclease domain is found at the N-terminus of many bunyavirus L proteins [1]. | Domain | |
PF04196 | Bunyavirus RNA dependent RNA polymerase (Bunya_RdRp) | Bunyavirus RNA dependent RNA polymerase | - | Family | |
PF21561 | Virus, RNA-directed RNA polymerase L, thumb ring domain (L_thumb_ring_vir) | Virus, RNA-directed RNA polymerase L, thumb ring domain | This domain is found in RNA-directed RNA polymerase L from Bunyavirus La Crosse (L) and similar viral sequences. This entry represents the thumb ring domain, which shows an alpha-beta structure that is structurally homologous to the influenza PB2 N1 ... | Domain | |