5ZWX
Crystal structure of Raphanus sativus AGDP1 AGD12 in complex with an H3K9me2 peptide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5zwxA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF05641 | e5zwxA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF05641 | ECOD (1.6) |
C [auth B] | F_UNCLASSIFIED | e5zwxB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | PF05641 | e5zwxB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF05641 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF05641 | Agenet domain (Agenet) | Agenet domain | This domain is related to the TUDOR domain Pfam:PF00567 [1]. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR008395 | Agenet-like domain | Domain |
A, C [auth B] | IPR014002 | Agenet domain, plant type | Domain |
B [auth P], D [auth Q] | IPR009072 | Histone-fold | Homologous Superfamily |
B [auth P], D [auth Q] | IPR007125 | Histone H2A/H2B/H3 | Domain |
B [auth P], D [auth Q] | IPR000164 | Histone H3/CENP-A | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A, C [auth B] | MSE | Parent Component: MET |
B [auth P], D [auth Q] | MLY | Parent Component: LYS :  AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 |