5ZVT | pdb_00005zvt

Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IA [auth Y]Collar,S_tail_recep_bde5zvtY1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
HA [auth X]Collar,S_tail_recep_bde5zvtX1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
GA [auth W]Trypsine5zvtW1 A: alpha arraysX: Major facilitator superfamily (MFS) general substrate transporterH: Major facilitator superfamily (MFS) general substrate transporterT: Major facilitator superfamily (MFS) general substrate transporterF: TrypsinECOD (v295.2)
FA [auth V]Collar,S_tail_recep_bde5zvtV1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
EA [auth U]Trypsine5zvtU1 A: alpha arraysX: Major facilitator superfamily (MFS) general substrate transporterH: Major facilitator superfamily (MFS) general substrate transporterT: Major facilitator superfamily (MFS) general substrate transporterF: TrypsinECOD (v295.2)
Z [auth P]Collar,S_tail_recep_bde5zvtP1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
X [auth N]Collar,S_tail_recep_bde5zvtN1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
V [auth L]Collar,S_tail_recep_bde5zvtL1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
T [auth J]Collar,S_tail_recep_bde5zvtJ1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
R [auth H]Collar,S_tail_recep_bde5zvtH1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
P [auth F]Collar,S_tail_recep_bde5zvtF1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
N [auth D]Collar,S_tail_recep_bde5zvtD1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
L [auth B]Trypsine5zvtB1 A: alpha arraysX: Major facilitator superfamily (MFS) general substrate transporterH: Major facilitator superfamily (MFS) general substrate transporterT: Major facilitator superfamily (MFS) general substrate transporterF: TrypsinECOD (v295.2)
DA [auth T]Collar,S_tail_recep_bde5zvtT1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
BA [auth R]Collar,S_tail_recep_bde5zvtR1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
Y [auth O]Collar,S_tail_recep_bde5zvtO1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
W [auth M]Collar,S_tail_recep_bde5zvtM1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
U [auth K]Collar,S_tail_recep_bde5zvtK1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
S [auth I]Collar,S_tail_recep_bde5zvtI1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
Q [auth G]Collar,S_tail_recep_bde5zvtG1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
O [auth E]Collar,S_tail_recep_bde5zvtE1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
M [auth C]Collar,S_tail_recep_bde5zvtC1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
K [auth A]Trypsine5zvtA1 A: alpha arraysX: Major facilitator superfamily (MFS) general substrate transporterH: Major facilitator superfamily (MFS) general substrate transporterT: Major facilitator superfamily (MFS) general substrate transporterF: TrypsinECOD (v295.2)
CA [auth S]Collar,S_tail_recep_bde5zvtS1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
AA [auth Q]Collar,S_tail_recep_bde5zvtQ1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: Collar,S_tail_recep_bdECOD (v295.2)
J [auth t]AAA_lid_3e5zvtt1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
I [auth r]AAA_lid_3e5zvtr1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
H [auth p]AAA_lid_3e5zvtp1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
G [auth n]AAA_lid_3e5zvtn1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
F [auth j]AAA_lid_3e5zvtj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
E [auth h]AAA_lid_3e5zvth1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
D [auth d]AAA_lid_3e5zvtd1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
C [auth f]AAA_lid_3e5zvtf1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
B [auth b]AAA_lid_3e5zvtb1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)
A [auth l]AAA_lid_3e5zvtl1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: AAA_lid_3ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
GA [auth W]3.90.1810.10 Alpha Beta Alpha-Beta Complex Reovirus components fold Reovirus componentsCATH (4.3.0)
GA [auth W]3.55.60.10 Alpha Beta 3-Layer(bab) Sandwich Reovirus components fold Reovirus componentsCATH (4.3.0)
GA [auth W]3.40.50.10760 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Reovirus coreCATH (4.3.0)
GA [auth W]3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
GA [auth W]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
FA [auth V]1.10.287.1520 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
EA [auth U]1.10.287.1520 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
Z [auth P]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
Z [auth P]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
X [auth N]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
X [auth N]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
V [auth L]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
V [auth L]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
T [auth J]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
T [auth J]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
R [auth H]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
R [auth H]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
P [auth F]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
P [auth F]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
N [auth D]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
N [auth D]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
L [auth B]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
L [auth B]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
DA [auth T]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
DA [auth T]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)
BA [auth R]1.10.2050.10 Mainly Alpha Orthogonal Bundle Protein mu-1, chain B, domain 3 Protein mu-1, chain B, domain 3CATH (4.3.0)
BA [auth R]2.60.120.420 Mainly Beta Sandwich Jelly Rolls Membrane penetration protein mu1, Chain B, domain 4CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
HA [auth X],
IA [auth Y]
VP3
GA [auth W]VP1 -
EA [auth U],
FA [auth V]
Core protein VP6- -
C-terminus of outer capsid protein VP5
N-terminus of outer capsid protein VP5
Outer capsid VP7- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
HA [auth X],
IA [auth Y]
IPR044949Inner capsid protein lambda-1/ VP3 superfamilyHomologous Superfamily
HA [auth X],
IA [auth Y]
IPR013087Zinc finger C2H2-typeDomain
HA [auth X],
IA [auth Y]
IPR054176Inner capsid protein lambda-1/VP3Domain
GA [auth W]IPR048601Reovirus core-spike protein lambda-2-like, GTase domainDomain
GA [auth W]IPR048602Reovirus core-spike protein lambda-2-like, 7th domainDomain
GA [auth W]IPR048604Reovirus core-spike protein lambda-2-like, ferredoxin-like domainDomain
GA [auth W]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
GA [auth W]IPR048598Reovirus core-spike protein lambda-2-like, first methyltransferase domainDomain
GA [auth W]IPR048596Reovirus core-spike protein lambda-2-like, N-terminal domainDomain
GA [auth W]IPR013783Immunoglobulin-like foldHomologous Superfamily
GA [auth W]IPR048603Reovirus core-spike protein lambda-2-like, 6th domainDomain
GA [auth W]IPR010311Reovirus core-spike lambda-2Family
GA [auth W]IPR048597Reovirus core-spike protein lambda-2-like, second methyltransferase domainDomain
GA [auth W]IPR048294Reovirus core-spike protein lambda-2-like, C-terminal domainDomain
EA [auth U],
FA [auth V]
IPR004317Sigma1/sigma2, reoviralFamily
IPR015960Mu1 membrane penetration protein, domain IVHomologous Superfamily
IPR036256Mu1/VP4 superfamilyHomologous Superfamily
IPR009113Outer capsid protein Mu1/VP4Family
IPR015962Mu1 membrane penetration protein, domain IIHomologous Superfamily
IPR044937Mu1 membrane penetration protein, domain IIIHomologous Superfamily
IPR015960Mu1 membrane penetration protein, domain IVHomologous Superfamily
IPR036256Mu1/VP4 superfamilyHomologous Superfamily
IPR009113Outer capsid protein Mu1/VP4Family
IPR015962Mu1 membrane penetration protein, domain IIHomologous Superfamily
IPR044937Mu1 membrane penetration protein, domain IIIHomologous Superfamily
IPR031413Outer capsid protein VP7Family