5ZUU
Crystal structure of AtCPSF30 YTH domain in complex with 10mer m6A-modified RNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | YTH | e5zuuC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: YTH | ECOD (1.6) |
B [auth A] | YTH | e5zuuA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: YTH | ECOD (1.6) |
C [auth B] | YTH | e5zuuB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: YTH | ECOD (1.6) |
D | YTH | e5zuuD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: YTH | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (utative) |
B [auth A] | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (utative) |
C [auth B] | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (utative) |
D | 3.10.590.10 | Alpha Beta | Roll | ph1033 like fold | ph1033 like domains | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth B], D | PF04146 | YT521-B-like domain (YTH) | YT521-B-like domain | A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells [3]. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppr ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B], D | IPR007275 | YTH domain | Domain |
A [auth C], B [auth A], C [auth B], D | IPR000571 | Zinc finger, CCCH-type | Domain |
A [auth C], B [auth A], C [auth B], D | IPR045168 | YTH domain containing protein | Family |
A [auth C], B [auth A], C [auth B], D | IPR036855 | Zinc finger, CCCH-type superfamily | Homologous Superfamily |