5YY0
Crystal structure of the HyhL-HypA complex (form II)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | HypA-like | 8057059 | 3002385 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5yy0A1 | A: beta meanders | X: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | H: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | T: all-beta domain in nickel-iron hydrogenase large subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5yy0A4 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5yy0A3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF01155 | e5yy0B2 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: HypA Ni-binding domain (From Topology) | T: HypA Ni-binding domain | F: PF01155 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5yy0B1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.30.2320.50 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00374 | Nickel-dependent hydrogenase (NiFeSe_Hases) | Nickel-dependent hydrogenase | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001501 | Nickel-dependent hydrogenase, large subunit | Family | |
IPR029014 | [NiFe]-hydrogenase, large subunit | Homologous Superfamily | |
IPR018194 | Nickel-dependent hydrogenase, large subunit, nickel binding site | Binding Site | |
IPR020538 | Hydrogenase nickel incorporation protein HypA/HybF, conserved site | Conserved Site | |
IPR000688 | Hydrogenase maturation factor HypA/HybF | Family |