Annotations: 5YX9

Cryo-EM structure of human TRPC6 at 3.8A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Levi_coat	e5yx9D1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
C	Levi_coat	e5yx9C1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
B	Levi_coat	e5yx9B1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
A	Levi_coat	e5yx9A1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF08344	Transient receptor ion channel II (TRP_2)	Transient receptor ion channel II	-	Family
A, B, C, D	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat
A, B, C, D	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Short transient receptor potential channel 6	clathrin binding protein binding binding monoatomic cation transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity monoatomic ion channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity calcium channel activity store-operated calcium channel activity calcium ion transmembrane transporter activity clathrin binding protein binding binding monoatomic cation transmembrane transporter activity monoatomic cation channel activity passive transmembrane transporter activity monoatomic ion channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity calcium channel activity store-operated calcium channel activity calcium ion transmembrane transporter activity metal ion transmembrane transporter activity cytoskeletal protein binding actinin binding identical protein binding protein homodimerization activity protein dimerization activity actin binding ion binding alcohol binding inositol 1,4,5 trisphosphate binding anion binding small molecule binding ATPase binding enzyme binding	positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality response to decreased oxygen levels cellular response to stimulus response to stimulus cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to chemical positive regulation of cytosolic calcium ion concentration biological regulation regulation of biological quality response to decreased oxygen levels cellular response to stimulus response to stimulus cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels cellular response to chemical stimulus cellular response to stress response to hypoxia response to stress response to chemical response to oxygen levels response to abiotic stimulus cellular process sexual reproduction reproductive process fertilization single fertilization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development system development inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis regulation of cytosolic calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport monoatomic ion transport monoatomic cation transport establishment of localization regulation of cellular process cell projection organization negative regulation of biological process regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development cell projection morphogenesis neuron projection morphogenesis regulation of dendrite morphogenesis regulation of biological process negative regulation of cellular component organization regulation of cell projection organization regulation of dendrite development negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis regulation of nervous system development cellular component organization negative regulation of neurogenesis dendrite development negative regulation of cellular process negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation cellular component organization or biogenesis negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development plasma membrane bounded cell projection organization negative regulation of dendrite morphogenesis negative regulation of developmental process dendrite morphogenesis cell morphogenesis involved in neuron differentiation negative regulation of cell development anatomical structure morphogenesis neuron development regulation of plasma membrane bounded cell projection organization monoatomic ion transmembrane transport calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport calcium ion transmembrane transport cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species positive regulation of biological process positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation positive regulation of cellular process regulation of neuron differentiation regulation of localization regulation of calcium ion transport positive regulation of calcium ion transport regulation of transport regulation of monoatomic ion transport positive regulation of transport positive regulation of monoatomic ion transport regulation of metal ion transport regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport positive regulation of molecular function positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport regulation of molecular function regulation of transmembrane transport positive regulation of transporter activity positive regulation of ion transmembrane transporter activity	cellular anatomical structure membrane cell-cell junction anchoring junction cell junction filtration diaphragm slit diaphragm cell periphery plasma membrane intracellular anatomical structure cytoplasm protein-containing complex transmembrane transporter complex membrane protein complex cellular anatomical structure membrane cell-cell junction anchoring junction cell junction filtration diaphragm slit diaphragm cell periphery plasma membrane intracellular anatomical structure cytoplasm protein-containing complex transmembrane transporter complex membrane protein complex cation channel complex transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR002153	Transient receptor potential channel, canonical	Family
A, B, C, D	IPR013555	Transient receptor ion channel domain	Domain
A, B, C, D	IPR002110	Ankyrin repeat	Repeat
A, B, C, D	IPR005821	Ion transport domain	Domain
A, B, C, D	IPR005462	Transient receptor potential channel, canonical 6	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: Q9Y210	focal segmental glomerulosclerosis 2 Hypertrophy non-small cell lung carcinoma psoriasis atypical teratoid rhabdoid tumor colorectal cancer cystic fibrosis lung cancer postmenopausal osteoporosis psychiatric disorder focal segmental glomerulosclerosis malignant ependymoma proteinuria colorectal adenoma cutaneous lupus erythematosus focal segmental glomerulosclerosis 2 Hypertrophy non-small cell lung carcinoma psoriasis atypical teratoid rhabdoid tumor colorectal cancer cystic fibrosis lung cancer postmenopausal osteoporosis psychiatric disorder focal segmental glomerulosclerosis malignant ependymoma proteinuria colorectal adenoma cutaneous lupus erythematosus disease susceptibility lung adenocarcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Ion channel (VIC) superfamily	Transient receptor potential channels

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.