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 5YSQ | pdb_00005ysq

Sulfate-complex structure of a pyrophosphate-dependent kinase in the ribokinase family provides insight into the donor-binding mode

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRibokinase-like 8036004 3001268 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRibokinase-like 8036004 3001268 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BVP4_haemagglute5ysqB1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: NucleotidyltransferaseF: VP4_haemagglutECOD (v295.2)
APylS_Ne5ysqA1 A: alpha arraysX: OB-foldH: Nucleic acid-binding proteinT: NucleotidyltransferaseF: PylS_NECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.1190.20 Alpha Beta 3-Layer(aba) Sandwich UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase RibokinaseCATH (4.3.0)
A3.40.1190.20 Alpha Beta 3-Layer(aba) Sandwich UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase RibokinaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00294pfkB family carbohydrate kinase (PfkB)pfkB family carbohydrate kinaseThis family includes a variety of carbohydrate and pyrimidine kinases. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
TM0415 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR011611Carbohydrate kinase PfkBDomain
A, B
IPR029056Ribokinase-likeHomologous Superfamily
A, B
IPR016831PPi-dependent kinaseFamily
A, B
IPR050306PfkB Carbohydrate KinaseFamily