5YI9
Solution structure of the LEDGF/p75 IBD - JPO2 (aa 56-91) complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LEDGF | e5yi9A1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11467 | Lens epithelium-derived growth factor (LEDGF) (LEDGF) | Lens epithelium-derived growth factor (LEDGF) | LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR040221 | CDCA7/CDA7L | Family | |
IPR018866 | Zinc-finger domain of monoamine-oxidase A repressor R1 | Domain | |
IPR021567 | Lens epithelium-derived growth factor, integrase-binding domain | Domain | |
IPR036218 | HIV integrase-binding domain superfamily | Homologous Superfamily | |
IPR000313 | PWWP domain | Domain | |
IPR035441 | TFIIS/LEDGF domain superfamily | Homologous Superfamily |