5YFZ
Plasmodium vivax SHMT bound with PLP-glycine and S-GS626
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5yfza_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Plasmodium vivax ) [TaxId: 5855 ], | SCOPe (2.08) |
B | d5yfzb_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Plasmodium vivax ) [TaxId: 5855 ], | SCOPe (2.08) |
C | d5yfzc_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | automated matches | automated matches | (Plasmodium vivax ) [TaxId: 5855 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | GABA-aminotransferase-like | 8096523 | 4000675 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PLP-dependent transferases | 8096524 | 3000954 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PLP-dependent transferases | 8096524 | 3000954 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PLP-dependent transferases | 8096524 | 3000954 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00464 | e5yfzA2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
A | PF00464 | e5yfzA1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
B | PF00464 | e5yfzB2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
B | PF00464 | e5yfzB1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
C | PF00464 | e5yfzC2 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
C | PF00464 | e5yfzC1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF00464 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00464 | Serine hydroxymethyltransferase (SHMT) | Serine hydroxymethyltransferase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR039429 | Serine hydroxymethyltransferase-like domain | Domain | |
IPR001085 | Serine hydroxymethyltransferase | Family | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR049943 | Serine hydroxymethyltransferase-like | Family |