5YCA
Crystal structure of inner membrane protein Bqt4 in complex with LEM2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ubiquitin-like | 8034468 | 3000157 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5ycaA1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF11976 | e5ycaA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF11976 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018004 | KilA/APSES-type HTH, DNA-binding | Domain | |
IPR036887 | HTH APSES-type DNA-binding domain superfamily | Homologous Superfamily | |
IPR037548 | Bouquet formation protein 4 | Family | |
IPR003163 | Transcription regulator HTH, APSES-type DNA-binding domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR022617 | Rad60/SUMO-like domain | Domain | |
B [auth C] | IPR025856 | HeH/LEM domain | Domain |
B [auth C] | IPR041885 | MAN1, winged-helix domain | Homologous Superfamily |
B [auth C] | IPR044780 | Heh2/Src1-like | Family |
B [auth C] | IPR018996 | Man1/Src1-like, C-terminal | Domain |