5YBZ
High resolution structure of complement C1q-like protein 3 C1q domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TNF-like | 8070840 | 3000061 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | TNF-like | 8070840 | 3000061 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | TNF-like | 8070840 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1q | e5ybzA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
B [auth C] | C1q | e5ybzC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
C [auth D] | C1q | e5ybzD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B [auth C] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C [auth D] | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth D] | PF00386 | C1q domain (C1q) | C1q domain | C1q is a subunit of the C1 enzyme complex that activates the serum complement system. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth D] | IPR008160 | Collagen triple helix repeat | Repeat |
A, B [auth C], C [auth D] | IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily |
A, B [auth C], C [auth D] | IPR001073 | C1q domain | Domain |
A, B [auth C], C [auth D] | IPR050822 | Cerebellin Synaptic Organizer | Family |