5Y09
Crystal structure of Deg9 at 295 K
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trypsin_2 | e5y09A3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
A | PDZ_2 | e5y09A2 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
A | KOG1320 | e5y09A1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: KOG1320 | ECOD (1.6) |
B | Trypsin_2 | e5y09B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
B | PDZ_2 | e5y09B3 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
B | KOG1320 | e5y09B1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: KOG1320 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13180 | PDZ domain (PDZ_2) | PDZ domain | - | Domain | |
PF17815 | PDZ domain (PDZ_3) | PDZ domain | This entry contains the second PDZ domain from plant peptidases such as Deg2 [1]. This domain is involved in cage assembly. | Domain | |
PF13365 | Trypsin-like peptidase domain (Trypsin_2) | Trypsin-like peptidase domain | This family includes trypsin-like peptidase domains. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Protease Do-like 9 |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041517 | Protease Do-like, PDZ domain | Domain | |
IPR046449 | Protease Do-like, PDZ domain superfamily | Homologous Superfamily | |
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR001478 | PDZ domain | Domain | |
IPR001940 | Peptidase S1C | Family | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily | |
IPR036034 | PDZ superfamily | Homologous Superfamily |