Annotations: 5XQI

Crystal structure of full-length human Rogdi

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rogdi_lz	e5xqiA1	A: alpha arrays	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v295)
B	RE_AlwI	e5xqiB1	A: alpha arrays	X: Flavodoxin-like	H: Restriction endonuclease-like	T: Restriction endonuclease-like	F: RE_AlwI	ECOD (v295)
C	Rogdi_lz	e5xqiC1	A: alpha arrays	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v295)
D	Rogdi_lz	e5xqiD1	A: alpha arrays	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF10259	Rogdi leucine zipper containing protein (Rogdi_lz)	Rogdi leucine zipper containing protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Protein rogdi homolog	-	developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development cellular developmental process neurogenesis cell differentiation developmental process multicellular organismal process head development animal organ development brain development nervous system development multicellular organism development central nervous system development anatomical structure development animal gross anatomical part developmental process system development cellular developmental process neurogenesis cell differentiation cellular process anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis homeostatic process biological regulation intracellular pH reduction regulation of intracellular pH vacuolar acidification cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis regulation of biological quality monoatomic cation homeostasis intracellular monoatomic ion homeostasis	cellular anatomical structure neuron to neuron synapse synapse cell junction hippocampal mossy fiber to CA3 synapse somatodendritic compartment cell body perikaryon neuronal cell body protein-containing complex intracellular anatomical structure cytoplasm RAVE complex axon cellular anatomical structure neuron to neuron synapse synapse cell junction hippocampal mossy fiber to CA3 synapse somatodendritic compartment cell body perikaryon neuronal cell body protein-containing complex intracellular anatomical structure cytoplasm RAVE complex axon cell projection neuron projection plasma membrane bounded cell projection dendrite dendritic tree membrane-bounded organelle intracellular organelle organelle envelope organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system transport vesicle intracellular vesicle presynapse cytoplasmic vesicle synaptic vesicle secretory vesicle vesicle exocytic vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR028241	RAVE subunit 2/Rogdi	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: Q9GZN7	amelocerebrohypohidrotic syndrome amelogenesis imperfecta tuberculosis atypical teratoid rhabdoid tumor Epileptic encephalopathy invasive ductal breast carcinoma malignant glioma osteosarcoma primitive neuroectodermal tumor ductal breast carcinoma in situ glioblastoma large cell medulloblastoma medulloblastoma Pick disease subependymal giant cell astrocytoma amelocerebrohypohidrotic syndrome amelogenesis imperfecta tuberculosis atypical teratoid rhabdoid tumor Epileptic encephalopathy invasive ductal breast carcinoma malignant glioma osteosarcoma primitive neuroectodermal tumor ductal breast carcinoma in situ glioblastoma large cell medulloblastoma medulloblastoma Pick disease subependymal giant cell astrocytoma astrocytic tumor epilepsy intellectual disability malignant ependymoma oligodendroglioma pilocytic astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.