5XPV | pdb_00005xpv

Structure of the V domain of amphioxus IgVJ-C2

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BtRNA_U5-meth_tre5xpvB1 A: beta barrelsX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Rubredoxin-relatedF: tRNA_U5-meth_trECOD (v294.2)
AtRNA_U5-meth_tre5xpvA1 A: beta barrelsX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Rubredoxin-relatedF: tRNA_U5-meth_trECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
amphioxus IgVJ-C2- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A, B
IPR003598Immunoglobulin subtype 2Domain
A, B
IPR013106Immunoglobulin V-set domainDomain
A, B
IPR003599Immunoglobulin domain subtypeDomain
A, B
IPR007110Immunoglobulin-like domainDomain
A, B
IPR051275Cellular adhesion and signaling domain-containing proteinFamily