5XBF
Crystal Structure of Myo7b C-terminal MyTH4-FERM in complex with USH1C PDZ3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | MyTH4 domain-like | 8088655 | 4006026 | SCOP2 (2022-06-29) |
A | SCOP2 Family | FERM domain-like | 8091823 | 4000747 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MyTH4 domain-like | 8091822 | 3002546 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | FERM central domain-like | 8091825 | 3001227 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ubiquitin-like | 8091824 | 3000157 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PH domain-like | 8091826 | 3000134 | SCOP2 (2022-06-29) |
B | SCOP2 Family | PDZ domain | 8084841 | 4001790 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | PDZ domain-like | 8084842 | 3000388 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IRS_1 | e5xbfA4 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: IRS_1 | ECOD (1.6) |
A | FERM_M | e5xbfA3 | A: alpha bundles | X: Acyl-CoA binding protein-like (From Topology) | H: Acyl-CoA binding protein-like (From Topology) | T: Acyl-CoA binding protein-like | F: FERM_M | ECOD (1.6) |
A | MyTH4 | e5xbfA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MyTH4 | ECOD (1.6) |
A | RA_2 | e5xbfA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: RA_2 | ECOD (1.6) |
B | PDZ | e5xbfB1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02174 | PTB domain (IRS-1 type) (IRS) | PTB domain (IRS-1 type) | - | Domain | |
PF21989 | RA like domain (RA_2) | RA like domain | - | Domain | |
PF00373 | FERM central domain (FERM_M) | FERM central domain | This domain is the central structural domain of the FERM domain. | Domain | |
PF00784 | MyTH4 domain (MyTH4) | MyTH4 domain | - | Family | |
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain |