5WVP
Expression, characterization and crystal structure of a novel beta-glucosidase from Paenibacillus barengoltzii
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | CBM_6 | e5wvpA2 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
| A | Fn3-like | e5wvpA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Fn3-like | ECOD (1.6) |
| A | Glyco_hydro_3 | e5wvpA4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_3 | ECOD (1.6) |
| A | Glyco_hydro_3_C | e5wvpA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Beta-D-glucan exohydrolase, C-terminal domain (From Topology) | T: Beta-D-glucan exohydrolase, C-terminal domain | F: Glyco_hydro_3_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00933 | Glycosyl hydrolase family 3 N terminal domain (Glyco_hydro_3) | Glycosyl hydrolase family 3 N terminal domain | - | Domain | |
| PF01915 | Glycosyl hydrolase family 3 C-terminal domain (Glyco_hydro_3_C) | Glycosyl hydrolase family 3 C-terminal domain | This domain is involved in catalysis and may be involved in binding beta-glucan [1]. This domain is found associated with Pfam:PF00933. | Domain | |
| PF14310 | Fibronectin type III-like domain (Fn3-like) | Fibronectin type III-like domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Beta-glucosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR050288 | Cellulose-degrading glycosyl hydrolase 3 | Family | |
| IPR001764 | Glycoside hydrolase, family 3, N-terminal | Domain | |
| IPR036962 | Glycoside hydrolase, family 3, N-terminal domain superfamily | Homologous Superfamily | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR019800 | Glycoside hydrolase, family 3, active site | Active Site | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR026891 | Fibronectin type III-like domain | Domain | |
| IPR036881 | Glycoside hydrolase family 3 C-terminal domain superfamily | Homologous Superfamily | |
| IPR002772 | Glycoside hydrolase family 3 C-terminal domain | Domain |
