5WTA
Crystal Structure of Staphylococcus aureus SdrE apo form
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d5wtac1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Bacterial adhesins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ], | SCOPe (2.08) |
A | d5wtaa1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Bacterial adhesins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ], | SCOPe (2.08) |
B | d5wtab1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Bacterial adhesins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ], | SCOPe (2.08) |
D | d5wtad1 | All beta proteins | Common fold of diphtheria toxin/transcription factors/cytochrome f | Bacterial adhesins | automated matches | automated matches | (Staphylococcus aureus subsp. aureus Mu50 ) [TaxId: 158878 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | SdrG_C_C | e5wtaC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: SdrG_C_C | ECOD (1.6) |
C | EUF07751 | e5wtaC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: EUF07751 | ECOD (1.6) |
A | SdrG_C_C | e5wtaA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: SdrG_C_C | ECOD (1.6) |
A | EUF07751 | e5wtaA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: EUF07751 | ECOD (1.6) |
B | SdrG_C_C | e5wtaB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: SdrG_C_C | ECOD (1.6) |
B | EUF07751 | e5wtaB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: EUF07751 | ECOD (1.6) |
D | SdrG_C_C | e5wtaD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: SdrG_C_C | ECOD (1.6) |
D | EUF07751 | e5wtaD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: EUF07751 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
D | 2.60.40.1280 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
D | 2.60.40.1290 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17961 | Bacterial Ig domain (Big_8) | Bacterial Ig domain | This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins. | Domain | |
PF10425 | C-terminus of bacterial fibrinogen-binding adhesin (SdrG_C_C) | C-terminus of bacterial fibrinogen-binding adhesin | This is the C-terminal half of a bacterial fibrinogen-binding adhesin SdrG. SdrG is a Gram-positive cell-wall-anchored adhesin that allows attachment of the bacterium to host tissues via specific binding to the beta-chain of human fibrinogen (Fg). Sd ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Serine-aspartate repeat-containing protein E | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033764 | SD-repeat containing protein, B domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
IPR008966 | Adhesion domain superfamily | Homologous Superfamily | |
IPR011252 | Fibrogen-binding domain 1 | Homologous Superfamily | |
IPR011266 | Fibrinogen-binding domain 2 | Domain | |
IPR019931 | LPXTG cell wall anchor domain | Domain | |
IPR041171 | SDR-like Ig domain | Domain |