5WK5 | pdb_00005wk5

Cryo-EM structure of P. aeruginosa flagellar filaments A443V

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SBP_bac_1	e5wk5A1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
AA [auth a]	SBP_bac_1	e5wk5a1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
B	SBP_bac_1	e5wk5B1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
BA [auth b]	SBP_bac_1	e5wk5b1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
CA [auth c]	SBP_bac_1	e5wk5c1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
D	SBP_bac_1	e5wk5D1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
EA [auth e]	SBP_bac_1	e5wk5e1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
F	SBP_bac_1	e5wk5F1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
FA [auth f]	SBP_bac_1	e5wk5f1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
G	SBP_bac_1	e5wk5G1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
GA [auth g]	SBP_bac_1	e5wk5g1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
H	SBP_bac_1	e5wk5H1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
HA [auth h]	SBP_bac_1	e5wk5h1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
I	SBP_bac_1	e5wk5I1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
JA [auth j]	SBP_bac_1	e5wk5j1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
K	SBP_bac_1	e5wk5K1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
KA [auth k]	SBP_bac_1	e5wk5k1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
L	SBP_bac_1	e5wk5L1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
LA [auth l]	SBP_bac_1	e5wk5l1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
M	SBP_bac_1	e5wk5M1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
MA [auth m]	SBP_bac_1	e5wk5m1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
N	SBP_bac_1	e5wk5N1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
NA [auth n]	SBP_bac_1	e5wk5n1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
O	SBP_bac_1	e5wk5O1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
OA [auth o]	SBP_bac_1	e5wk5o1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
P	SBP_bac_1	e5wk5P1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
R	SBP_bac_1	e5wk5R1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
S	SBP_bac_1	e5wk5S1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
U	SBP_bac_1	e5wk5U1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
W	SBP_bac_1	e5wk5W1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
X	SBP_bac_1	e5wk5X1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
Y	SBP_bac_1	e5wk5Y1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
Z	SBP_bac_1	e5wk5Z1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
V	SBP_bac_1	e5wk5V1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
T	SBP_bac_1	e5wk5T1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
Q	SBP_bac_1	e5wk5Q1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
J	SBP_bac_1	e5wk5J1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
IA [auth i]	SBP_bac_1	e5wk5i1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
E	SBP_bac_1	e5wk5E1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
DA [auth d]	SBP_bac_1	e5wk5d1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)
C	SBP_bac_1	e5wk5C1	A: alpha arrays	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	B-type flagellin	structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR046358	Flagellin, C-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001029	Flagellin, N-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001492	Flagellin	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR010810	Flagellin hook, IN motif	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.