5WGG
Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Anaerobic sulfatase maturating enzyme (anSME)-like | 8048600 | 4006068 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PqqD-like | 8106655 | 4005476 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Radical SAM enzymes | 8106653 | 3000308 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Winged helix DNA-binding domain | 8106656 | 3000034 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5wggA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF04055,PF13186 | e5wggA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04055,PF13186 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain | |
PF13186 | Iron-sulfur cluster-binding domain (SPASM) | Iron-sulfur cluster-binding domain | This domain occurs as an additional C-terminal iron-sulfur cluster binding domain in many radical SAM domain, Pfam:PF04055 proteins. The domain occurs in a number of proteins that modify a protein to become an active enzyme, or a peptide to become a ... | Domain | |
PF13353 | 4Fe-4S single cluster domain (Fer4_12) | 4Fe-4S single cluster domain | This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. | Domain | |
PF13165 | Six-cysteine peptide SCIFF (SCIFF) | Six-cysteine peptide SCIFF | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Radical SAM domain protein | - | - | ||
CteA | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007197 | Radical SAM | Domain | |
IPR023885 | 4Fe4S-binding SPASM domain | Domain | |
IPR000385 | MoaA/NifB/PqqE, iron-sulphur binding, conserved site | Conserved Site | |
IPR047602 | Sactionine bond-forming enzyme CteB-like, SPASM domain | Domain | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR024025 | SCIFF radical SAM maturase | Family | |
IPR023867 | Anaerobic sulphatase maturase, radical SAM | Family | |
IPR023975 | Six-cysteine peptide SCIFF | Family |