5VYZ

Crystal structure of Lactococcus lactis pyruvate carboxylase in complex with cyclic-di-AMP

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APYC_OADA_1ste5vyzA7 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_1stECOD (1.6)
APYC_OADA_2nd_1e5vyzA1 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_2nd_1ECOD (1.6)
APYC_OADA_3rde5vyzA5 A: a+b two layersX: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-relatedT: a+b domain in pyruvate carboxylaseF: PYC_OADA_3rdECOD (1.6)
AATP-graspe5vyzA8 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: ATP-graspF: ATP-graspECOD (1.6)
ABiotin_carb_Ce5vyzA4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Biotin_carb_CECOD (1.6)
ABiotin_lipoyle5vyzA2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
AHMGL-like_2e5vyzA3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: HMGL-like_2ECOD (1.6)
ABiotin_carb_Ne5vyzA6 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: PreATP-grasp domainF: Biotin_carb_NECOD (1.6)
BPYC_OADA_1ste5vyzB5 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_1stECOD (1.6)
BPYC_OADA_2nd_1e5vyzB3 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_2nd_1ECOD (1.6)
BPYC_OADA_3rde5vyzB7 A: a+b two layersX: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-relatedT: a+b domain in pyruvate carboxylaseF: PYC_OADA_3rdECOD (1.6)
BATP-graspe5vyzB4 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: ATP-graspF: ATP-graspECOD (1.6)
BBiotin_carb_Ce5vyzB1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Biotin_carb_CECOD (1.6)
BBiotin_lipoyle5vyzB8 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
BHMGL-like_2e5vyzB6 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: HMGL-like_2ECOD (1.6)
BBiotin_carb_Ne5vyzB2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: PreATP-grasp domainF: Biotin_carb_NECOD (1.6)
CPYC_OADA_1ste5vyzC8 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_1stECOD (1.6)
CPYC_OADA_2nd_1e5vyzC7 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_2nd_1ECOD (1.6)
CPYC_OADA_3rde5vyzC4 A: a+b two layersX: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-relatedT: a+b domain in pyruvate carboxylaseF: PYC_OADA_3rdECOD (1.6)
CATP-graspe5vyzC1 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: ATP-graspF: ATP-graspECOD (1.6)
CBiotin_carb_Ce5vyzC2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Biotin_carb_CECOD (1.6)
CBiotin_lipoyle5vyzC5 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
CHMGL-like_2e5vyzC3 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: HMGL-like_2ECOD (1.6)
CBiotin_carb_Ne5vyzC6 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: PreATP-grasp domainF: Biotin_carb_NECOD (1.6)
DPYC_OADA_1ste5vyzD1 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_1stECOD (1.6)
DPYC_OADA_2nd_1e5vyzD2 A: alpha arraysX: RuvA-CH: post-HMGL domain-like (From Topology)T: post-HMGL domain-likeF: PYC_OADA_2nd_1ECOD (1.6)
DPYC_OADA_3rde5vyzD7 A: a+b two layersX: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related (From Homology)H: Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-relatedT: a+b domain in pyruvate carboxylaseF: PYC_OADA_3rdECOD (1.6)
DATP-graspe5vyzD8 A: a+b complex topologyX: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)H: Protein kinase/SAICAR synthase/ATP-graspT: ATP-graspF: ATP-graspECOD (1.6)
DBiotin_carb_Ce5vyzD4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: CO dehydrogenase molybdoprotein N-domain-likeF: Biotin_carb_CECOD (1.6)
DBiotin_lipoyle5vyzD6 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoylECOD (1.6)
DHMGL-like_2e5vyzD5 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: HMGL-like_2ECOD (1.6)
DBiotin_carb_Ne5vyzD3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: PreATP-grasp domainF: Biotin_carb_NECOD (1.6)