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Crystal structure of hFA9 EGF repeat with O-glucose trisaccharide External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) A [auth B] d5vygb1 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Factor IX (IXa) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) A [auth B] d5vygb2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) A [auth B] d5vygb3 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) B [auth A] d5vyga1 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Factor IX (IXa) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) B [auth A] d5vyga2 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) B [auth A] d5vyga3 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) C d5vygc1 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Factor IX (IXa) Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) C d5vygc3 Artifacts Tags Tags Tags C-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08) C d5vygc2 Artifacts Tags Tags Tags N-terminal Tags Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A [auth B] SCOP2B Superfamily EGF/Laminin-like 8038255 3000412 SCOP2B (2021-05-27) B [auth A] SCOP2B Superfamily EGF/Laminin-like 8038255 3000412 SCOP2B (2021-05-27) C SCOP2B Superfamily EGF/Laminin-like 8038255 3000412 SCOP2B (2021-05-27)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A [auth B] PF00008 e5vygB1 A: few secondary structure elements X: EGF-like H: EGF-related T: EGF/Laminin F: PF00008 ECOD (1.6) B [auth A] PF00008 e5vygA1 A: few secondary structure elements X: EGF-like H: EGF-related T: EGF/Laminin F: PF00008 ECOD (1.6) C PF00008 e5vygC1 A: few secondary structure elements X: EGF-like H: EGF-related T: EGF/Laminin F: PF00008 ECOD (1.6)
Chains Accession Name Description Comments Source A [auth B] ,B [auth A] ,C PF00008 EGF-like domain (EGF) EGF-like domain There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is t ... There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. Less Domain
Chains Polymer Molecular Function Biological Process Cellular Component A [auth B] ,B [auth A] ,C Coagulation factor IX
Chains Accession Name Type A [auth B] ,B [auth A] ,C IPR000294 Gamma-carboxyglutamic acid-rich (GLA) domain Domain A [auth B] ,B [auth A] ,C IPR018097 EGF-like calcium-binding, conserved site Conserved Site A [auth B] ,B [auth A] ,C IPR000742 EGF-like domain Domain A [auth B] ,B [auth A] ,C IPR018114 Serine proteases, trypsin family, histidine active site Active Site A [auth B] ,B [auth A] ,C IPR009003 Peptidase S1, PA clan Homologous Superfamily A [auth B] ,B [auth A] ,C IPR017857 Coagulation factor-like, Gla domain superfamily Homologous Superfamily A [auth B] ,B [auth A] ,C IPR001314 Peptidase S1A, chymotrypsin family Family A [auth B] ,B [auth A] ,C IPR033116 Serine proteases, trypsin family, serine active site Active Site A [auth B] ,B [auth A] ,C IPR001254 Serine proteases, trypsin domain Domain A [auth B] ,B [auth A] ,C IPR035972 Gamma-carboxyglutamic acid-rich (GLA) domain superfamily Homologous Superfamily A [auth B] ,B [auth A] ,C IPR001881 EGF-like calcium-binding domain Domain A [auth B] ,B [auth A] ,C IPR043504 Peptidase S1, PA clan, chymotrypsin-like fold Homologous Superfamily A [auth B] ,B [auth A] ,C IPR000152 EGF-type aspartate/asparagine hydroxylation site PTM A [auth B] ,B [auth A] ,C IPR012224 Peptidase S1A, coagulation factor VII/IX/X/C/Z Family