5VU2
Electron cryo-microscopy of "immature" Chikungunya VLP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
N [auth J] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
M [auth I] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
O [auth K] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
P [auth L] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth M] | Alpha_E1_glycop_2nd | e5vu2M1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
A [auth M] | Alpha_E1_glycop_1st | e5vu2M2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
B [auth A] | Alpha_E2_glycop_2nd | e5vu2A3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_2nd | ECOD (1.6) |
B [auth A] | Alpha_E2_glycop_1st | e5vu2A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_1st | ECOD (1.6) |
B [auth A] | Alpha_E2_glycop_3rd | e5vu2A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_3rd | ECOD (1.6) |
E [auth B] | Alpha_E2_glycop_2nd | e5vu2B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_2nd | ECOD (1.6) |
E [auth B] | Alpha_E2_glycop_1st | e5vu2B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_1st | ECOD (1.6) |
E [auth B] | Alpha_E2_glycop_3rd | e5vu2B3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_3rd | ECOD (1.6) |
F [auth N] | Alpha_E1_glycop_2nd | e5vu2N1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
F [auth N] | Alpha_E1_glycop_1st | e5vu2N2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
H [auth C] | Alpha_E2_glycop_2nd | e5vu2C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_2nd | ECOD (1.6) |
H [auth C] | Alpha_E2_glycop_1st | e5vu2C3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_1st | ECOD (1.6) |
H [auth C] | Alpha_E2_glycop_3rd | e5vu2C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_3rd | ECOD (1.6) |
I [auth O] | Alpha_E1_glycop_2nd | e5vu2O1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
I [auth O] | Alpha_E1_glycop_1st | e5vu2O2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
K [auth D] | Alpha_E2_glycop_2nd | e5vu2D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_2nd | ECOD (1.6) |
K [auth D] | Alpha_E2_glycop_1st | e5vu2D3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_1st | ECOD (1.6) |
K [auth D] | Alpha_E2_glycop_3rd | e5vu2D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E2_glycop_3rd | ECOD (1.6) |
L [auth P] | Alpha_E1_glycop_2nd | e5vu2P2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
L [auth P] | Alpha_E1_glycop_1st | e5vu2P1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
G [auth W] | Alpha_E3_glycop | e5vu2W1 | A: a+b two layers | X: Glycoprotein E3 (From Topology) | H: Glycoprotein E3 (From Topology) | T: Glycoprotein E3 | F: Alpha_E3_glycop | ECOD (1.6) |
C [auth U] | Alpha_E3_glycop | e5vu2U1 | A: a+b two layers | X: Glycoprotein E3 (From Topology) | H: Glycoprotein E3 (From Topology) | T: Glycoprotein E3 | F: Alpha_E3_glycop | ECOD (1.6) |
D [auth V] | Alpha_E3_glycop | e5vu2V1 | A: a+b two layers | X: Glycoprotein E3 (From Topology) | H: Glycoprotein E3 (From Topology) | T: Glycoprotein E3 | F: Alpha_E3_glycop | ECOD (1.6) |
J [auth X] | Alpha_E3_glycop | e5vu2X1 | A: a+b two layers | X: Glycoprotein E3 (From Topology) | H: Glycoprotein E3 (From Topology) | T: Glycoprotein E3 | F: Alpha_E3_glycop | ECOD (1.6) |
N [auth J] | Peptidase_S3 | e5vu2J1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
M [auth I] | Peptidase_S3 | e5vu2I1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
O [auth K] | Peptidase_S3 | e5vu2K1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
P [auth L] | Peptidase_S3 | e5vu2L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
S [auth F] | Alpha_E1_glycop_like | e5vu2F1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
W [auth H] | Alpha_E1_glycop_like | e5vu2H1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
Q [auth E] | Alpha_E1_glycop_like | e5vu2E1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
U [auth G] | Alpha_E1_glycop_like | e5vu2G1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family | |
C [auth U], D [auth V], G [auth W], J [auth X] | PF01563 | Alphavirus E3 glycoprotein (Alpha_E3_glycop) | Alphavirus E3 glycoprotein | - | Family |
M [auth I], N [auth J], O [auth K], P [auth L] | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |